ZOE-LOOP(1)

ZOE-LOOP(1) 👑

okay so bestie, welcome to the zoe-loop manual page — User Commands section, very demure, very Unix. This is a SNAP module, and it's literally just here to run tests on loop. no cap. let's get into it 🫶

✨ NAME ✨

zoe-loop — SNAP module zoe-loop. that's it, that's the name, she's an icon 💅

🌸 SYNOPSIS 🌸

zoe-loop <test> [iterations - default 1000]

so you hand her a <test> — that part is mandatory, she needs to know what you want — and then optionally you tell her how many iterations to run. and if you don't say? she defaults to 1000 because she's got main character energy and she'll just decide for you. periodt. 💖

🎀 OPTIONS 🎀

the flags, the whole flags, and nothing but the flags. every single one, no skipping, we don't do that here 🦋

🧚 the big one

• -all — runs everything. the full vibe check. run all the tests, bestie ✨

💜 vector + hashy things

• -Vec — the Vec test 🔥
• -IVec — the IVec test 🔥
• -FVec — the FVec test 🔥
• -TVec — the TVec test 🔥
• -Hash — the Hash test 🔥
• -Xtree — the Xtree test 🔥

🌈 feature-y things

• -Feature — the Feature test 🎀
• -FeatureVec — the FeatureVec test 🎀

🧬 bio-coded things

• -FastaFile — the FastaFile test 🌸
• -DNA — the DNA test 🧬
• -Protein — the Protein test 🌸
• -Alignment — the Alignment test 🌈
• -CDS — the CDS test 🌈
• -Palign — the Palign test 🌈

📊 stats-y things

• -Distribution — the Distribution test ✨
• -Duration — the Duration test ✨
• -State — the State test ✨
• -Transition — the Transition test ✨

⚠️ the plot twist

heads up bestie — the tests below are not part of -all. they do their own thing. also they require files, so you can't just rock up empty-handed, okay? 🫶

• -FeatureTable <file> — the FeatureTable test, and she needs a <file> 📄
• -Model — the Model test 👑
• -Scanner — the Scanner test 👑
• -Counter — the Counter test 👑
• -HMM <file> — the HMM test, and yes, she needs a <file> for this one too 📄

💖 SEE YOU LATER, BESTIE 💖

this little page lives under zoe-loop 2010-07-28, and it was last touched October 2013 — so yeah, she's been around, she's vintage, she's an icon, and she's still serving. go run some tests, ily, bye 🦋💅✨