WHAM-BUILD(1)

✨ WHAM-BUILD(1) ✨

okay bestie, we're in the User Commands section of the manual and this one is called wham-build 💖 it's part of the whole wham situation, no cap.

🌸 NAME 🌸

wham-build — Wisconsin's High-Throughput Alignment Method 👑

🎀 DESCRIPTION 🎀

💅 Usage 💅

wham-build [options]* -l <int> <ref_sequence> <basepath> -l <int>
specify the length of short reads <ref_sequence>
comma-separated list of fiels with ref sequences <basepath>
write wham data to files with this dir/basename

so like, real talk: you got your options, then -l <int> which tells it the length of the short reads 🧬, then <ref_sequence> which is literally a comma-separated list of fiels with ref sequences (yes that's the original spelling, i'm not touching it, it's iconic) 📂, and then <basepath> which is where it writes wham data to files with this dir/basename. periodt.

✨ OPTIONS ✨

• -v <int> — report hits with <=v errors, and the range is 0-5; this one ignores qualities 🫶
• -p <int> — specify the number of fragments for alignments 🧩
• -m <int> — discard subsequences appearing more than <int> times (default: 100). so like the overachievers get yeeted 💀
• -b <int> — specify the number of buckets 🪣
• -a — find all valid matches, and heads up: this needs much more memory 😭
• --mask — keep masked characters in the sequences (default: on) 🎭
• --unmask — discard masked characters in the sequences. Masks are treated as Ns 🙈
• --version — print version information ⭐
• -h/--help — print this usage message 🌈

👑 AUTHOR 👑

This manpage was written by Nilesh Patra for the Debian distribution and can be used for any other usage of the program 💜

okay that's the whole page bestie, go forth and align 🦋

wham-build 0.1.5 · February 2021 — mwah, love u, bye 💅💖