WEIGHT(1)

🌸 WEIGHT(1) — the manual page, but make it cute 🌸

okay so bestie, welcome to weight(1) from the General Commands Manual 💖 this one lives in the group chat as weight, and she's here to hand out sequence weights for an alignment. periodt.

✨ NAME ✨

weight — calculates sequence weights for an alignment 🧚

✨ SYNOPSIS ✨

weight [-options] <alignment file>

✨ DESCRIPTION ✨

This manual page documents briefly the weight command. no cap, it's a short one. 🎀

weight is a program that calculates weights for a sequence alignment. that's the whole job, and she does it. iconic behaviour honestly. 💅

✨ OPTIONS ✨

the available options, bestie, all of them, nobody's getting left out:

• -b <f> — Use BLOSUM weighting scheme at <f> fractional identity. 🦋
• -f <f> — Filter out seqs w/ fractional ident > <x> [0-1]. bye bye redundant besties 👋
• -h — Help; print version and usage info. the classic "wait what do I do" button 🙈
• -o <file> — Save weight-annotated alignment in <outfile>. she's documenting everything 📝
• -p — Use position based weight scheme (Henikoff & Henikoff). 🔥
• -s <n> — Sample <n> sequences at random into a new alignment. rng era 🎲
• -v — Use Voronoi weight scheme (Sibbald & Argos). 🌈
• --informat <s> — Specify alignment file format <s>. Allowed formats: SELEX, MSF, Clustal, a2m, PHYLIP. know your format or perish 💀
• --quiet — Suppress verbose banner. for when you simply cannot with the small talk 🤫

✨ SEE ALSO ✨

afetch(1), alistat(1), compalign(1), compstruct(1), revcomp(1), seqsplit(1), seqstat(1), sfetch(1), shuffle(1), sindex(1), sreformat(1), stranslate(1),

(the whole squad, fr fr 🫶)

✨ AUTHOR ✨

Sean Eddy HHMI/Department of Genetics Washington University School of Medicine 4444 Forest Park Blvd., Box 8510 St Louis, MO 63108 USA Phone: 1-314-362-7666 FAX : 1-314-362-2157 Email: eddy@genetics.wustl.edu

This manual page was written by Nelson A. de Oliveira <naoliv@gmail.com>, for the Debian project (but may be used by others). 👑

cute sign-off time 🎀✨ this lil masterpiece is dated Mon, 01 Aug 2005 15:28:08 -0300, and she answers to the name WEIGHT(1) — main character energy only, no notes. bye bestie, go weight something 💖🦋🌸