TRNA2SAP(1)

✨ TRNA2SAP(1) ✨

okay bestie, so this is trna2sap — part of the NCBI Tools User's Manual family — and it's literally the glow-up artist for your tRNA data 💅

🎀 NAME 🎀

trna2sap — convert tRNAscan-SE output to an ASN.1 Seq-annot object 🦋

🌸 SYNOPSIS 🌸

trna2sap [-] [-a] [-c str] [-f str] [-i filename] [-j] [-m str] [-n str]
[-o filename] [-p dir] [-r dir] [-s] [-t str] [-u] [-x str]

💖 DESCRIPTION 💖

So basically: trna2sap reads a text file that was produced by tRNAscan-SE, and then it produces a corresponding ASN.1 Seq-annot in the format that other NCBI tools understand. it's giving translator, it's giving middle-child energy, it's giving actually useful 😌✨

👑 OPTIONS 👑

A summary of options is included below, and yes bestie, we're doing all of them 💖

• - — Print usage message. that's it, that's the whole flag. just a lil dash asking for help 🥺
• -a — Add tRNAscan-SE citation. credit where credit is due, periodt 📚
• -c str — Comment.
• -f str — Substring Filter.
• -i filename — Single Input file (standard input by default). if you don't say anything, it'll just read from stdin, no biggie 🫶
• -j — Just produce a five-column feature table, à la trna2tbl(1).
• -m str — ReMark.
• -n str — Annotation Name (normally “tRNA”). yes queen, name your annotation 🏷️
• -o filename — Single Output file (standard output by default). no -o? it'll spill onto stdout instead 💫
• -p dir — Path to files.
• -r dir — Path for Results.
• -s — Ignore Pseudo tRNAs. fake ones, we don't know them 💀
• -t str — Annotation Title (normally “tRNAscan-SE”).
• -u — Ignore Undetermined tRNAs. if it can't decide what it is, we're not claiming it either 🙈
• -x str — File selection suffix with -p (.trna by default).

🌈 AUTHOR 🌈

The National Center for Biotechnology Information. iconic institution behaviour honestly 👑

🦋 SEE ALSO 🦋

sequin(1), tbl2asn(1), trna2tbl(1).

💜 shoutout to the NCBI for this one — this page is tagged NCBI and dated 2006-01-11. yeah, it's an elder, and it still ate. slay 🎀✨