trees-bootstrap(1)

📦
version 4.1 · 3 versions
, in debian trixie, ubuntu questing, ubuntu resolute, ubuntu stonking

✨ trees-bootstrap — the manual, but make it cute ✨

okay so bestie, welcome to trees-bootstrap, section 1 of the manual 💅 this is the little program that goes "hold up, do these different files even agree about your partitions?" and then shows you the receipts. no cap.

🌸 NAME 🌸

trees-bootstrap — compare support for partitions between different files.

🎀 SYNOPSIS 🎀

trees-bootstrap file1 [file2 ...  ] –predicates predicate file [OPTIONS]

🦋 DESCRIPTION 🦋

Compare support for partitions between different files. that's it, that's the whole vibe ✨ you hand it a bunch of files, it tells you how much they agree. iconic behaviour honestly.

💖 INPUT OPTIONS 💖

  • -h, –help — produce help message. the classic "help me bestie" move 🫶
  • -s arg (=10%), –skip arg (=10%) — number of trees to skip. default is 10%, so it chucks the first bit and pretends it never happened 🙈
  • -u arg, –until arg — read until this number of trees. stop right there, that's enough trees 🌳
  • -m arg, –max arg — thin tree samples down to this number of trees. slimming down the sample, main character energy 💅
  • -x arg, –subsample arg — factor by which to sub-sample. take every x-th one, lowkey selective 👑
  • –predicates arg — predicates to examine. tell it which ones you care about, bestie 🎯
  • –min-support arg (=0.1) — minimum value of predicates to consider interesting.. (yes, two dots, that's the original, we don't edit ✋). default 0.1 — anything below that is not it.
  • -V, –verbose — output more log messages on stderr. yap mode: activated 🗣️🔥

⭐ BLOCK BOOTSTRAP OPTIONS ⭐

  • –bootstrap — do block bootstrapping to get a CI on the posterior probabilities. this is the glow-up that gives you error bars 💅
  • –samples arg (=10000) — number of bootstrap samples. default 10000, go off queen 👑
  • –pseudocount arg (=1) — extra 0/1 to add to bootstrap samples. default 1 🍓
  • –blocksize arg — block size to use in block boostrap. (spelled "boostrap" in the original and we are NOT touching it, periodt ✋)
  • –seed arg — random seed. set it and your randomness becomes reproducible, fr fr 🌱

🌈 REPORTING OPTIONS 🌈

  • –separation arg (=0) — only report trees/partitions if they differ by this many LODs. default 0 👀
  • –confidence arg (=0.95) — width of confidence intervals. default 0.95 — she's confident, she's giving statistical certainty ✨
  • –LOD-table arg — write the partitions LOD10's to a file. save the tea for later 🫖

💀 REPORTING BUGS 💀

BAli-Phy online help: http://www.bali-phy.org/docs.php.

Please send bug reports to bali-phy-users@googlegroups.com. don't be shy, they want the bugs, ngl 🐛

🧚 AUTHORS 🧚

Benjamin Redelings. ty for your service legend 🫡

and that's a wrap, bestie 💖 this page is from the trees-bootstrap(1) manual, dated Feb 2018. go forth and bootstrap responsibly, mwah 💜
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