TREE-PUZZLE(1)

🌸 TREE-PUZZLE(1) 🌸

ok so bestie, welcome to the manual page for tree-puzzle, and no it's not the Debian man page name thing you're thinking of, it's the actual command 💖

✨ NAME ✨

tree-puzzle — reconstruction of phylogenetic trees by maximum likelihood 🌳🧬

🎀 SYNOPSIS 🎀

tree-puzzle

that's it. that's the whole synopsis. she's a whole interactive vibe, not a flag-having girlie 💅

🦋 DESCRIPTION 🦋

okay so this manual page documents briefly the tree-puzzle command. it was written for the Debian GNU/Linux distribution specifically because the original program does not have a manual page — so yes, this is a ✨community service✨, we're filling the void, no cap.

also, quick history moment: TREE-PUZZLE is the new name for the program previously known as PUZZLE! 🫶 rebrand era, we love to see it.

tree-puzzle is an interactive console program that implements a fast tree search algorithm, quartet puzzling, which allows analysis of large data sets and automatically assigns estimations of support to each internal branch. iconic behaviour, honestly.

TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption ⏰. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree, and to visualize the phylogenetic content of a sequence alignment. it's giving "I can do both, actually" 😌

there is also a paralellized version tree-ppuzzle available — yes, parallel with extra letters, we're quoting it exactly, don't come for me 💀

💅 OPTIONS 💅

there are no options. none. zero. the options list is empty, bestie, it's minimalism as a lifestyle.

for usage please look at:

/usr/share/doc/tree-puzzle/tree-puzzle.pdf

that PDF is the moment, go read her 📖✨

👑 SEE ALSO 👑

• phylip(1)
• treetool(1)
• tree-ppuzzle(1)

🍓 credits & copyright vibes 🍓

this manual page was written by Dr. Guenter Bechly <gbechly@debian.org>, for the Debian GNU/Linux system (but may be used by others). shoutout, legend behaviour 🫶

and that's the whole page, bestie!! this came to you from the General Commands Manual, dated April 20, 2001, living under the name TREE-PUZZLE(1) — a true vintage icon, we stan an old-school manual 💖🌈⭐