STRINGIPHY(1)

📦 version 1.8, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

✨ STRINGIPHY(1) ✨

okay bestie, welcome to the stringiphy manual page 💖 it's a User Command, it lives in section 1, and it's genuinely about to make ur little exon babies into a whole entire transcript. let's get into it 🧚

🌸 NAME 🌸

stringiphy — Attempt to string together predicted exons into full transcripts

like the name literally says. it strings. exons. together. 💅

🦋 DESCRIPTION 🦋

Attempt to string together predicted exons into full transcripts or gene fragments.

that's the whole vibe. predicted exons go in, full transcripts (or gene fragments, we don't judge 🫶) come out. slay.

💜 USAGE 💜

stringiphy [OPTIONS] <exons.gff>
  • (Predictions should be sorted and non-overlapping; use 'refeature --sort --unique')
🚨 no cap bestie, read that twice: ur predictions should be sorted and non-overlapping before u hand them to stringiphy. if they're not, go run refeature --sort --unique first. do not skip this step, it's giving chaos otherwise 😭

🎀 OPTIONS 🎀

  • --help, -h — Print this help message.

and that's literally it, she's a one-option icon 👑

and that's the whole page, periodt ✨

this was stringiphy 1.4, from way back in May 2016 🕰️🌸 she's vintage, she's still serving, and she's still out here building transcripts. mwah, take care of her 💖🦋🎀

📦 where this page comes from