SPLICED_BAM2GFF(1)

✨ SPLICED_BAM2GFF(1) ✨

okay bestie, gather round, we're talking about spliced_bam2gff from the User Commands corner of the manual, section 1, iykyk 💅

🌸 NAME 🌸

spliced_bam2gff — a whole lil collection of tools to annotate genomes using long read transcriptomics data 🧬✨

🦋 DESCRIPTION 🦋

💖 Usage of spliced_bam2gff: 💖

Here's the tea, one flag at a time, no cap:

• -M — says the input is coming from minimap2. tell it where the data came from, bestie 🗺️
• -V — prints out the version. that's it. that's the flag. ⭐
• -g — use the strand tag as the feature orientation, and then fall back to the read strand if that tag isn't available. tag first, read strand as the backup plan 🎀
• -h — prints out the help message. your friendly lil "what do I do" button 🫶
• -s — use the read strand (the one from the BAM flag) as the feature orientation. straight from the BAM flag, periodt 🌈
• -t int — how many cores you wanna use. the default is 4, so if you don't say anything, four it is 🔥

👑 AUTHOR 👑

this manpage was written by Nilesh Patra for the Debian distribution, and it can be used for any other usage of the program 💜

and that's the whole page, bestie!! 🦋 this is spliced_bam2gff version 0.1.0+ds, dated September 2020 — go annotate some genomes and slay 💅✨🍓