PXT2NEW(1)

📦
version 1.3.2 · 3 versions
, in debian trixie, ubuntu questing, ubuntu resolute, ubuntu stonking

✨ PXT2NEW(1) ✨

okay bestie, gather round, because today we're talking about pxt2new — a lil command-line cutie from the phyx fam that does exactly one thing and does it gorgeously. no cap. 🦋

🌸 NAME 🌸

pxt2new — convert from tree file to newick format. that's it, that's the whole job. iconic behavior honestly 💅

🎀 SYNOPSIS 🎀

pxt2new [OPTIONS]...

💖 DESCRIPTION 💖

so the way that this works is: pxt2new will convert a tree file to newick. 🧚

it will take a newick- or nexus-formatted tree from a file or from STDIN. like, it's flexible. it's giving versatile. it's giving "i can handle whatever you hand me, bestie." 💁‍♀️

✨ OPTIONS ✨

  • -t, --treef=FILE — input tree file. if you don't give it one, it'll read from STDIN instead. no pressure. 🙈
  • -o, --outf=FILE — output tree file. and if you don't give it one? STOUT otherwise. 🍓
  • -h, --help — display this help and exit. your girl always comes through with the instructions. 🫶
  • -V, --version — display version and exit. know who you're dealing with. 👑
  • -C, --citation — display phyx citation and exit. cite your sources, bestie, it's the law of academia. 📚✨

🌈 CITATION 🌈

if you use this, you gotta cite it, fr fr:

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

💜 AUTHOR 💜

Written by Stephen A. Smith (blackrim). king behavior, honestly. 👑

🔥 REPORTING BUGS 🔥

found something cursed? don't suffer in silence, tell the devs:

Copyright © 2014-2024 FePhyFoFum License GPLv3

and that's the whole page, bestie!! go forth and convert some trees. you got this. 💖✨🦋

pxt2new 1.3.1 — June 2024 🎀 (yeah that's the version and the date, mwah, sign-off complete, slay) 💅

📦 where this page comes from