PXSSORT(1)

📦
version 1.3.2 · 3 versions
, in debian trixie, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 PXSSORT(1) — the manual page, but make it make sense 💖

okay so bestie, welcome to pxssort from the User Commands section. Yes it's a real manual page, yes I made it cute, no the facts did not change even a little. Periodt. 🎀

✨ NAME ✨

pxssort — sort sequences by id or length 🦋

✨ SYNOPSIS ✨

pxssort [OPTIONS]...

✨ DESCRIPTION ✨

So what does she do? She sorts sequences by id or by length. That's it, that's the whole personality, and honestly? Iconic. 💅

She'll happily take fasta, phylip, and nexus formats, and she'll read them from a file or from STDIN. No cap, she's flexible like that. 🌸

✨ OPTIONS ✨

  • -s, --seqf=FILE — the input sequence file. If you don't hand her one, she'll just vibe with STDIN instead. 🍓
  • -b, --sortby — what are we sorting by, bestie? Pick your fighter: 1:id (this is the default, the main character), 2:id rev, 3:length (<), 4:length (>). Choose wisely. 👑
  • -o, --outf=FILE — the output sequence file. Otherwise she writes to STOUT. 🙈
  • -h, --help — display this help and dip out. Exit stage left. 🚪
  • -V, --version — display the version and exit. Show me the numbers. ⭐
  • -C, --citation — display the phyx citation and exit. Cite your sources, it's giving academic integrity. 📚

✨ CITATION ✨

If you use this, please cite the girlies who made it:

Brown, Joseph W., Joseph W. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

✨ AUTHOR ✨

Written by Stephen A. Smith (blackrim), Joseph W. Brown 🫶

✨ REPORTING BUGS ✨

Found a bug? Don't suffer in silence, tell them:

Copyright © 2017-2024 FePhyFoFum License GPLv3 🌈

and that's the whole page, bestie!! this was pxssort 1.3.1, born in June 2024, and it's giving PXSSORT(1) energy forever. go forth and sort your sequences. slay. 💖✨🎀

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