PXMRCA(1)

🌸 PXMRCA(1) 🌸

ok so bestie, welcome to pxmrca — she lives in the User Commands part of your manual, and she is literally the moment. 💅

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✨ NAME ✨

pxmrca — get number of descendant tips of internal nodes by mrca statements 🎀

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✨ SYNOPSIS ✨

pxmrca [OPTIONS]...

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✨ DESCRIPTION ✨

ok so here's the tea, bestie 🫖 — pxmrca gets the number of descendant tips of internal nodes that you specify with mrca statements.

She'll take a newick- or nexus-formatted tree from a file or from STDIN 👀, plus an MRCA file, and that MRCA file has this format, exactly:

MRCANAME = tip1 tip2 ...

periodt. that's the vibe check, and she passes it. 💖

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✨ OPTIONS ✨

• -t, --treef=FILE — input newick tree file, STDIN otherwise 🌳
• -m, --mrca=FILE — file containing MRCA declarations 📝
• -o, --outf=FILE — output newick file, STOUT otherwise 💾
• -h, --help — display this help and exit 🙋
• -V, --version — display version and exit ⭐
• -C, --citation — display phyx citation and exit 📚

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✨ CITATION ✨

if you're gonna cite her (and you should, she's iconic), here's the whole thing, no cap:

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

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✨ AUTHOR ✨

Written by Stephen A. Smith (blackrim) 👑 main character energy fr fr

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✨ REPORTING BUGS ✨

found a bug? 🐛 don't be shy, tell the devs:

• Report bugs to: <https://github.com/FePhyFoFum/phyx/issues>
• phyx home page: <https://github.com/FePhyFoFum/phyx>

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✨ COPYRIGHT ✨

Copyright © 2013-2024 FePhyFoFum License GPLv3 🌈

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and that's the whole page bestie, ily, go count some descendant tips 💖✨🦋

pxmrca 1.3.1 🌸 June 2024 — mwah, signed, sealed, PXMRCA(1) 💅🎀