PXBDFIT(1)

✨ pxbdfit — the manual page bestie 💖

okay so this is pxbdfit(1), a User Command, and it's genuinely one of my faves. she fits a lineage diversification model to a tree, and honestly? iconic behaviour. 🦋

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🌸 NAME 🌸

pxbdfit — fit a lineage diversification model to a tree 🧚

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🎀 SYNOPSIS 🎀

pxbdfit [OPTIONS]...

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💅 DESCRIPTION 💅

So what she does is: fit a lineage diversification model to a tree. that's the whole vibe. 🫶

and she's flexible too — she'll take a newick- or nexus-formatted tree from a file or from STDIN. no cap, she eats either one. 🔥

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✨ OPTIONS ✨

• -t, --treef=FILE — the input treefile, bestie. if you don't hand her one she'll just read from STDIN instead. 🌈
• -m, --model=STRING — which diversification model are we doing today? your choices are 'yule', 'bd' (that's the default, jsyk), or 'best'. pick your fighter. 💜
• -o, --outf=FILE — the output file. and if you don't give her one? STOUT otherwise. (yes, the manpage says STOUT. I am not touching it. the original said it, I said it. periodt. 💀)
• -h, --help — display this help and exit. the classic. the goat. 🙈
• -V, --version — display version and exit. 🎀
• -C, --citation — display the phyx citation and exit. give credit where it's due, bestie. 👑

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📚 CITATION 📚

if you're gonna use this (and you should, she ate), cite the girlies:

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

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🫶 AUTHOR 🫶

Written by Joseph W. Brown. thank you king. 💖

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🐛 REPORTING BUGS 🐛

found a bug? not her fault but also please tell someone. report bugs to: <https://github.com/FePhyFoFum/phyx/issues> and the phyx home page is here: <https://github.com/FePhyFoFum/phyx> — go be a good citizen. 🌟

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©️ COPYRIGHT ©️

Copyright © 2016-2024 FePhyFoFum License GPLv3. slay, legally speaking. 💅

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and that's the whole page!! 🌸 this was pxbdfit 1.3.1, dated June 2024, and it lives as PXBDFIT(1) in the manual. ily, go fit some models bestie 🦋✨💖