PULLSEQ(1)

✨ PULLSEQ ✨

okay bestie, welcome to pullseq(1) — section 1 of the manual, User Commands, the whole vibe 💅

🌸 NAME 🌸

pullseq — <short_description> (yes, literally that placeholder, it's giving mystery, iykyk 💀)

🦋 DESCRIPTION 🦋

pullseq is a bioinformatics tool for manipulating fasta and fastq files. it's the friend who reorganizes your whole sequence closet for you, no cap 🧬✨

Version: 1.0.2 — and the name lookup method is UTHASH (Written by bct - copyright 2012-2015). iconic lineage fr fr 👑

💖 Usage:

here's the group chat menu of how you can slide into pullseq, bestie. all of these are exactly as written, don't freestyle them:

pullseq -i <input fasta/fastq file> -n <header names to select>

pullseq -i <input fasta/fastq file> -m <minimum sequence length>

pullseq -i <input fasta/fastq file> -g <regex name to match>

pullseq -i <input fasta/fastq file> -m <minimum sequence length>
-a <max sequence length>

pullseq -i <input fasta/fastq file> -t

cat <names to select from STDIN> | pullseq -i <input fasta/fastq
file> -N

🎀 Options:

• -i, --input — Input fasta/fastq file (required). required required, like you can't skip it, periodt 🙅‍♀️
• -n, --names — File of header id names to search for 🔍
• -N, --names_stdin — Use STDIN for header id names
• -g, --regex — Regular expression to match (PERL compatible; always case-insensitive). she does not care about your capital letters, she's above that 💅
• -m, --min — Minimum sequence length
• -a, --max — Maximum sequence length
• -l, --length — Sequence characters per line (default 50)
• -c, --convert — Convert input to fastq/fasta (e.g. if input is fastq, output will be fasta). glow-up transformation arc ✨
• -q, --quality — ASCII code to use for fasta->fastq quality conversions
• -e, --excluded — Exclude the header id names in the list (-n). the block button, but for headers 🚫
• -t, --count — Just count the possible output, but don't write it. window shopping only 🛍️
• -h, --help — Display this help and exit
• -v, --verbose — Print extra details during the run. she's a talker, and we love that 🗣️
• --version — Output version information and exit

👑 AUTHOR 👑

This manpage was written by Nilesh Patra for the Debian distribution and can be used for any other usage of the program. slay, thank you for your service 🫶

and that's the whole page bestie, you're officially fluent 💖 this was pullseq 1.0.2, dated March 2021 — go select some sequences, you absolute main character 🌈⭐