PROKKA-GENPEPT_TO_FASTA_DB(1)

📦 version 1.14.6, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 NAME 💖

okay so bestie, this is the PROKKA-GENPEPT_TO_FASTA_DB(1) manual page, hanging out in the User Commands section, and it's all about prokka-genpept_to_fasta_db — which does rapid annotation of prokaryotic genomes. 🧬✨ no cap, that's the whole NAME vibe.

🌸 SYNOPSIS 🌸

run it like this, fr fr:

prokka-genpept_to_fasta_db [options] [genome1.gbp ...] > proteins.faa

🎀 DESCRIPTION 🎀

okay so here's the tea ☕: this page is literally just the options list, and every single one matters. I'm giving you all of them, no skipping, periodt. 💅

  • --help — this help, bestie. 🫶
  • --verbose! — verbose progress, bestie (default '0'). 🗣️✨
  • --format=s — the input format you're feeding it (default 'genbank'). 📂
  • --sep=s — the separator that sits between EC/gene/product (default '~~~'). ✂️
  • --blank=s — if EC/gene/product is empty, swap in this instead (default ''). 🫥
  • --pseudo! — include /pseudo genes (default '0'). 👻
  • --hypo! — include 'hypothetical protein' genes (default '0'). 🤔
  • --minlen=i — the minimum peptide length (default '0'). 📏
bestie, those defaults are exactly as written — '0', 'genbank', '~~~', '' — so don't let anyone tell you otherwise. 💖

💖 cute sign-off: this whole thing is prokka-genpept_to_fasta_db version 1.11, dated February 2015, and the manual name is PROKKA-GENPEPT_TO_FASTA_DB(1). periodt. 🎀✨🌈

📦 where this page comes from