PROKKA-GENBANK_TO_FASTA_DB(1)

✨ PROKKA-GENBANK_TO_FASTA_DB(1) ✨

okay bestie, welcome to the PROKKA-GENBANK_TO_FASTA_DB(1) manual page — section User Commands, obviously. This is your girl for prokka-genbank_to_fasta_db, and she's ready to spill the entire tea, no details left behind. 💅

🌸 NAME 🌸

prokka-genbank_to_fasta_db — rapid annotation of prokaryotic genomes. periodt. 🧬✨

✨ SYNOPSIS ✨

prokka-genbank_to_fasta_db [options] [genome1.gbk ...] > proteins.faa

💖 DESCRIPTION 💖

okay so here's the whole rundown, bestie. every option, every default, nothing skipped, because we do not gatekeep. 🫶

• --help — this help. that's it. that's the whole meal. 💁‍♀️
• --verbose! — verbose progress. default: '0'. so if you want the play-by-play, you know what to do. 👀
• --format=s — input format. default: 'genbank'. lowkey important, highkey iconic. 🌟
• --idtag=s — what tag to use as Fasta ID. default: 'protein_id'. yes, Fasta ID, capital F energy. 🎀
• --sep=s — separator between EC/gene/product. default: '~~~'. the little squigglies are doing the most. 〰️
• --blank=s — replace empty EC/gene/product with this. default: ''. an empty string, so it's giving nothing where there was nothing. 💀
• --pseudo! — include /pseudo genes. default: '0'. if you want them, say less. 🧚
• --hypo! — include 'hypothetical protein' genes. default: '0'. the maybe-maybe-not proteins, we see them. 👑
• --minlen=i — minimum peptide length. default: '0'. short peptides can stay, apparently. 🍓

that's the whole manual, bestie. no crumbs. now go forth and prokka-genbank_to_fasta_db your way through the genome chaos. 🌈

and for the cute sign-off: this is from prokka-genbank_to_fasta_db version 1.11, dated February 2015. mwah. 💖💅