PICOPORE-TEST(1)

💖 PICOPORE-TEST 💖

okay bestie, gather round, because we're talking about picopore-test from the picopore crew (manpage name PICOPORE-TEST(1), if you're keeping receipts) ✨

🌸 NAME 🌸

picopore-test — compresses to temporary files and checks that all datasets and attributes are equal 🫶

🎀 SYNOPSIS 🎀

picopore-test [-h] --mode {lossless,deep-lossless,raw} [--revert]
[--fastq] [--summary] [--manual STR] [-v] [-y] [-t INT] [--prefix STR]
[--skip-root] [--print-every INT] [input [input ...]]

🦋 DESCRIPTION 🦋

It's a tool for reducing the size of an Oxford Nanopore Technologies dataset without losing any data. no cap. 🧬✨

picopore-test compresses to temporary files and checks that all datasets and attributes are equal (lossless modes only). it's literally the vibe check for your compression 🔍

✨ OPTIONS ✨

💅 positional arguments:

• input — list of directories or fast5 files to shrink. hand over your chonky files, bestie, we'll make them smol 🍓

🌈 optional arguments:

• -h, --help — show this help message and exit. the classic. the icon 👑
• --mode {lossless,deep-lossless,raw} — choose compression mode. pick your fighter ⭐
• --revert — reverts files to original size (lossless modes only). undo button, but make it science 💜
• --fastq, --no-fastq — retain FASTQ data (raw mode only) (Default: --fastq). keep the FASTQ or don't, your call 🎀
• --summary, --no-summary — retain summary data (raw mode only) (Default: --nosummary). summary data retention, toggle style 🙈
• --manual STR — manually remove only groups whose paths contain STR (raw mode only, regular expressions permitted, overrides defaults). you're the main character here, you decide 🔥
• -v, --version — show version number and exit. quick lil flex 💫
• -y — skip confirm step. no "are you sure", just send it 😭
• -t INT, --threads INT — number of threads (Default: 1). more threads more better fr fr 🧚
• --prefix STR — add prefix to output files to prevent overwrite. protect your originals, protect your peace 🫶
• --skip-root, --no-skip-root — ignore files in root input directories for albacore realtime compression (Default: --no-skip-root). for the albacore realtime girlies 🌸
• --print-every INT — print a dot every approximately INT files, or -1 to silence (Default: 100). dot dot dot, it's giving progress 💜

👑 AUTHOR 👑

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program. absolute legend behaviour 💖

and that's the whole page, bestie!! picopore-test version 1.2.0, dated June 2020 — slay, ate, no crumbs, periodt ✨🦋💅