PICOPORE-RENAME(1)

📦 version 1.2.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💅 PICOPORE-RENAME 💅

okay bestie, welcome to the picopore-rename(1) glow-up ✨ this is the user-commands era of the manual, and she's here to help you rename stuff inside Oxford Nanopore Technologies FAST5 files. yes, those FAST5 files. we love her.

🌸 NAME 🌸

picopore-rename — renaming groups and datasets within Oxford Nanopore Technologies FAST5 files 🧬✨

🎀 SYNOPSIS 🎀

[-h] -p PATTERN -r REPLACEMENT [-v] [-y] [-t INT] [--prefix STR]
[--skip-root] [--print-every INT] [input [input ...]]

like, that's the whole vibe. flags first, files last, main character energy 🫶

🦋 DESCRIPTION 🦋

A tool for renaming groups and datasets within Oxford Nanopore Technologies FAST5 files 💖

that's it. that's the job. she renames groups, she renames datasets, she does it inside Oxford Nanopore Technologies FAST5 files, and she slays 💅

✨ OPTIONS ✨

🌈 positional arguments:

  • input — list of directories or fast5 files to shrink 👑 (yes, that's what it says, don't @ me)

💜 optional arguments:

  • -h, --help — show this help message and exit 🥰 your little emergency exit when you're lost
  • -p PATTERN, --pattern PATTERN — String or regex to replace 🔍 this is the thing getting swapped out
  • -r REPLACEMENT, --replacement REPLACEMENT — String or regex replacement for PATTERN 🔁 this is the thing going in its place. pattern + replacement = the iconic duo fr fr
  • -v, --version — show version number and exit ⭐ a lil flex, then she dips
  • -y — skip confirm step 😳 no "are you sure bestie?" — she just goes. use with intention.
  • -t INT, --threads INT — number of threads (Default: 1) 🔥 crank it up if you want her working in parallel
  • --prefix STR — add prefix to output files to prevent overwrite 🛡️ literally the seatbelt of this whole operation
  • --skip-root, --no-skip-root — ignore files in root input directories for albacore realtime compression (Default: --no-skip-root) 🙈
  • --print-every INT — print a dot every approximately INT files, or -1 to silence (Default: 100) ✨ little progress dots, so cute, so reassuring
not me telling you to double-check your -p and -r before you run this with -y 💀 once she renames, she renames.

👑 AUTHOR 👑

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program. 🫶 absolute legend behavior, no cap.

and that's a wrap on picopore-rename 💖 this is picopore-rename version 1.2.0, dated June 2020 — the manual page, the moment, the icon. mwah 💅✨

📦 where this page comes from