PARSINSERT(1)

🌸 PARSINSERT(1) 🌸

User Commands · parsinsert · bestie edition 💅

✨ NAME ✨

ParsInsert — Parsimonious Insertion of unclassified sequences into phylogenetic tree 🦋

okay so literally, it takes your mystery sequences and yeets them into a tree. iconic behaviour fr fr.

💖 DESCRIPTION 💖

parsinsert [options]  <insert_sequences>

Perform Insertion of Sequences into Given Tree 🌈 that's the whole vibe.

Now here's the options menu, bestie — read it, don't skim it, I see you skimming 👀

• -m <mask file> — read the mask from this file 🎀
• -s <tree sequences> — read core tree sequences from this file (default: PI_Tree.fasta) 🌱
• -t <tree file> — read core tree from this file (default: PI_Tree.tree) 🌳
• -x <tree taxonomy> — read core tree taxonomy from this file 🧚
• -o <output file> — output taxonomy for each insert sequence to this file (default: PI_Results.log) 📝
• -l [-|<log file>] — create a log file (default is ParsInsert.log) 🫶
• -n# — number of best matches to display 🔢
• -c# — percent threshold cutoff ✂️
• -p — print node comments in the newick file 🌿
• -D# — print branch lengths using # decimal places 📐

also floating around in there: tree sequence file: PI_Tree.fasta 👑 keep it in mind, it's giving default energy.

👑 LICENSE 👑

Copyright (C) 2007-2011 David Knox 💜

This program comes with ABSOLUTELY NO WARRANTY — like, none, zero, nada, don't come for me 😭

This is free software, and you are welcome to redistribute under certain conditions — see /usr/share/common-licenses/GPL-3. 📜

and that's the whole page, bestie!! this was parsinsert 1.04, February 2014 — shoutout to the source, love that for them. mwah, go insert some sequences, you got this 🫶✨💅