NPS2GPS(1)

💖 NPS2GPS(1) 💖

the girlies said "convert my nucleotide-protein sets" and honestly? we DELIVERED. this one lives in the General Commands Manual, bestie, and it's about to be your new fave. ✨

🎀 NAME 🎀

nps2gps — no cap, this bad boy converts nucleotide-protein sets into ASN.1 genomic product sets. it's giving glow-up, but for bioseqs. 💅

🌸 SYNOPSIS 🌸

nps2gps [-] [-B] [-D] [-F] [-G str] [-L] [-N] [-P] [-Q] [-R] [-S] [-T]
[-U] [-f str] [-i filename] [-o filename] [-p path] [-r path] [-x str]

okay so that's a LOT of little flag friends and every single one of them matters. don't skip a single one, i'm watching. 👀

🦋 DESCRIPTION 🦋

so nps2gps takes NCBI Bioseq-sets that are just plain little nucleotide-protein sets and turns them into full genomic product sets — complete with mRNA transcripts, periodt. 💖

and then it outputs all of that as text ASN.1. that's the vibe. that's the whole job. iconic behaviour, honestly. 👑

✨ OPTIONS ✨

here's the rundown, bestie — every single flag, no skips, we don't gatekeep here:

• - — prints the usage message. like a little "hi, here's how to use me" moment. 🫶
• -B — NG and NR rRNA. 🧬
• -D — RefSeq mRNA Titles.
• -F — map by Feature ID.
• -G str — General ID database name. you're naming the database here, bestie.
• -L — Lock components in advance. very proactive of you. 🔒
• -N — Promote Non-coding RNAs. get them their moment. 🌟
• -P — mRNA ID from Protein.
• -Q — Special mRNA titles.
• -R — Enable Remote fetching from ID. reaching out across the internet, main character energy. 🌈
• -S — Special ncRNA on preRNA.
• -T — map by Transcript ID.
• -U — Remove Unnecessary gene cross-references. decluttering, we love to see it. 🧹
• -f str — Substring filter. only the matching bits get through, iykyk. 🍓
• -i filename — Single input file. and if you don't say anything? default = stdin. she'll just read whatever you pipe in. 💜
• -o filename — Single output file. default = stdout, so it'll just scream into your terminal unless you redirect it. 😭
• -p path — Path to files for batch conversion. 🗂️
• -r path — Path for results of batch conversion. where the glow-ups land. ✨
• -x str — File selection suffix for batch conversion. default = .ent. 🎀

ngl bestie, -p and -r are for when you're doing a whole batch — so many files, so little time. 😭

💜 AUTHOR 💜

The National Center for Biotechnology Information. shoutout to the NCBI girlies, they ate and left no crumbs. 👑

🌟 SEE ALSO 🌟

go read these too, they're all part of the fam:

• asn2asn(1)
• asn2ff(1)
• asn2gb(1)
• asn2xml(1)
• asndhuff(1)

and that's the whole page, bestie!! this lil masterpiece came from the NCBI Tools User's Manual, version dated 2016-09-01 — so yes, she's an older queen but she still serves. 💅✨ mwah, go convert something. 🫶💖