MRS_TOOLS-VIS(1)

💖 mrs_tools-vis — bestie's guide to peeking at your spectra 💖

okay so this is a page from the User Commands section of the manual (yes, the MRS_TOOLS-VIS(1) one, you found it, slay) and it's literally just about looking at your MRS data. no fitting drama, no pipeline chaos, just vibes and pictures. 🎀

✨ NAME ✨

mrs_tools vis — a quick lil visualisation of a NIfTI-MRS file or an FSL-MRS basis set. that's it, that's the job. 💅

🌸 SYNOPSIS 🌸

mrs_tools vis [-h] [--ppmlim LOW HIGH] [--mask MASK] [--save SAVE]
[--display_dim DISPLAY_DIM] [--no_mean] FILE or DIR
[FILE or list of FILEs...]

🦋 OPTIONS 🦋

👑 POSITIONAL ARGUMENTS

• FILE or DIR — hand it a NIfTI file, or a whole directory of basis sets. it'll take either, no stress. 🫶

⭐ OPTIONAL ARGUMENTS

• -h, --help — prints a help message and dips. classic. ✨
• --ppmlim LOW HIGH — caps the fit to a frequency range. the default is (.2,4.2) so if you don't say anything it just rolls with that. 🌈
• --mask MASK — the mask for MRSI. masking up, but make it spectroscopy. 🎀
• --save SAVE — saves the fig to a path. screenshot girlies could never, this is the real way. 💾✨
• --display_dim DISPLAY_DIM — a NIfTI-MRS tag. it means do NOT average across this dimension — so that dim stays un-collapsed and fully itself. main character dimension energy honestly. 👑
• --no_mean — when you've got multiple spectra and you'd rather not see the mean signal line plotted, flip this. bye bye mean line. 🙈

🔥 SEE ALSO 🔥

• mrs_tools(1)
• mrs_tools-info(1), mrs_tools-merge(1), mrs_tools-split(1), mrs_tools-reorder(1), mrs_tools-reshape(1), mrs_tools-conjugate(1)

that's the whole page bestie, go visualise something gorgeous. 💜

signed off from November 2023 — mwah, catch you in the next manpage. 🧚🍓