MIPE2SBEPRIMERS(1)

📦
version 1.1 · 2 versions
, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble

✨ MIPE2SBEPRIMERS ✨

okay bestie, so this is mipe2sbeprimers.pl — she's a lil Perl script (from the User Contributed Perl Documentation corner of the manual, iykyk) and her whole job is generating a list of SBE primers from a MIPE file 🧬💅

like, you hand her a MIPE file and she hands you back the SBE primer glow-up. and what's in that output, you ask? she's giving you a whole little roster:

  • PCR ID
  • SNP ID
  • SBE ID
  • SBE oligo
  • SBE strand
  • SBE tail
  • SBE specific
  • SBE remark

all of that, every single time. no skimping. 🫶

quick lore drop: this is based on MIPE version v1.1 ⭐

and the arguments she takes are:

  • mipe_file — the MIPE file, obviously, the main character here 👑
  • (optional) a list of PCR IDs — if you only want certain ones, this is your moment 🌸

🌈 SYNOPSIS 🌈

here's the vibe, literally just:

mipe2sbeprimers.pl your_file.mipe <pcr_id1> <pcr_id2>

so: the file, then however many PCR IDs you feel like naming. that's it, that's the whole thing. slay. ✨

🦋 ADDITIONAL INFO 🦋

want more? go peek at http://mipe.sourceforge.net — she's got the whole backstory over there 💖

🎀 AUTHOR 🎀

this icon was built by Jan Aerts (jan.aerts@bbsrc.ac.uk) — no cap, show some respect 🫡💜

and that's the tea, bestie — this page is from perl v5.32.1, dated 2021-02-21, and it's MIPE2SBEPRIMERS(1) in the manual. go forth and primer. 💅🌈

📦 where this page comes from