mia-3dbinarycombine(1)

📦
version 2.4.7 · 3 versions
, in debian bookworm, ubuntu jammy

🌸 NAME 🌸

okay bestie, meet mia-3dbinarycombine 💅 — the tool that combines two binary images. that's the whole vibe. two binary masks walk in, one binary mask walks out. iconic, no notes.

✨ SYNOPSIS ✨

mia-3dbinarycombine -1 <file1> -2 <file2> -o <out-file> [options]

🦋 DESCRIPTION 🦋

so like, mia-3dbinarycombine is literally here to combine two binary images by some kind of operation. that's it, that's the job. you bring two masks, you pick a lil operation, you get a mask back. main character energy fr fr 🌈

💅 OPTIONS 💅

  • -1, --file1=(required, input); io — input mask image 1 🫶
    • for supported file types see PLUGINS:3dimage/io
  • -2, --file2=(required, input); io — input mask image 2 🫶
    • for supported file types see PLUGINS:3dimage/io
  • -p, --operation=nor — operation to be applied 👑
    • or ‐ logocal or
    • nor ‐ logocal nor
    • and ‐ logocal and
    • nand ‐ logocal nand
    • xor ‐ logocal xor
    • nxor ‐ logocal nxor
  • -o, --out-file=(output, required); io — output mask image 💖
    • for supported file types see PLUGINS:3dimage/io

🎀 Help & Info 🎀

  • -V, --verbose=warning — verbosity of output, print messages of given level and higher priorities. supported priorities starting at lowest level are:
    • trace ‐ Function call trace
    • debug ‐ Debug output
    • info ‐ Low level messages
    • message ‐ Normal messages
    • warning ‐ Warnings
    • fail ‐ Report test failures
    • error ‐ Report errors
    • fatal ‐ Report only fatal errors
  • --copyright — print copyright information 📜
  • -h, --help — print this help 🙋
  • -?, --usage — print a short help
  • --version — print the version number and exit

🧚 Processing 🧚

  • --threads=-1 — Maxiumum number of threads to use for processing, This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation). ⚡

🌈 PLUGINS: 3dimage/io 🌈

  • analyze — Analyze 7.5 image
    • Recognized file extensions: .HDR, .hdr
    • Supported element types: unsigned 8 bit, signed 16 bit, signed 32 bit, floating point 32 bit, floating point 64 bit
  • datapool — Virtual IO to and from the internal data pool
    • Recognized file extensions: .@
  • dicom — Dicom image series as 3D
    • Recognized file extensions: .DCM, .dcm
    • Supported element types: signed 16 bit, unsigned 16 bit
  • hdf5 — HDF5 3D image IO
    • Recognized file extensions: .H5, .h5
    • Supported element types: binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, signed 64 bit, unsigned 64 bit, floating point 32 bit, floating point 64 bit
  • inria — INRIA image
    • Recognized file extensions: .INR, .inr
    • Supported element types: signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit
  • mhd — MetaIO 3D image IO using the VTK implementation (experimental).
    • Recognized file extensions: .MHA, .MHD, .mha, .mhd
    • Supported element types: signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit
  • nifti — NIFTI-1 3D image IO. The orientation is transformed in the same way like it is done with 'dicomtonifti --no-reorder' from the vtk-dicom package.
    • Recognized file extensions: .NII, .nii
    • Supported element types: signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, signed 64 bit, unsigned 64 bit, floating point 32 bit, floating point 64 bit
  • vff — VFF Sun raster format
    • Recognized file extensions: .VFF, .vff
    • Supported element types: unsigned 8 bit, signed 16 bit
  • vista — Vista 3D
    • Recognized file extensions: .-, .V, .VISTA, .v, .vista
    • Supported element types: binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit
  • vti — 3D image VTK-XML in- and output (experimental).
    • Recognized file extensions: .VTI, .vti
    • Supported element types: signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit
  • vtk — 3D VTK image legacy in- and output (experimental).
    • Recognized file extensions: .VTK, .VTKIMAGE, .vtk, .vtkimage
    • Supported element types: signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit

🍓 EXAMPLE 🍓

ok so imagine you wanna combine the binary images b1.png and b2.png by using the 'nor' operation and store the result in b1nor2.png. you'd type:

mia-3dbinarycombine -1 b1.png -2 b2.png -p nor -o b1nor2.png

and boom 💥 slay.

👑 AUTHOR(s) 👑

Gert Wollny

This software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option '--copyright'.

⚠️ bestie, note the ABSOLUTELY NO WARRANTY — that's not a vibe, that's the law. 💀

and that's the whole page, pookie 🫶 this one's from the USER COMMANDS section, version v2.4.7, and it's literally called mia-3dbinarycombine(1). go forth and combine, you got this 💖✨

📦 where this page comes from