mia-2dseriescorr(1)

mia-2dseriescorr(1) 💖

okay bestie, welcome to the General Commands Manual page for mia-2dseriescorr — she's a user command, she's iconic, and she's about to tell you how your pixels are vibing with each other over time. 🎀

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✨ NAME ✨

mia-2dseriescorr — Evaluate the time-intensity correlation in a series of images.

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🦋 SYNOPSIS 🦋

mia-2dseriescorr -i <in-base> -o <outname> [options]

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💅 DESCRIPTION 💅

So basically: mia-2dseriescorr takes a set of images that are in temporal succession (a little glow-up montage of frames, one after another) and evaluates images that represent the time-intensity correlation in the horizontal direction and the vertical direction, plus the average correlation of each pixel with its neighbors. Three for the price of one, we love an overachiever.

⚠️ Heads up: all input images must be of the same pixel type and size. No mixing sizes, no chaos. The vibe check is mandatory. 💀

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🔥 OPTIONS 🔥

🌸 Main Options

• -i, --in-base==(required, input); io — the input file name base. For supported file types see PLUGINS:2dimage/io down below.
• -o, --outname==(required, output); io — the output file name where the avarage per-pixel correlation gets saved. For supported file types see PLUGINS:2dimage/io.
• -z, --horizontal==(output); io — the horiZontal correlation output file name. (yes, the z is doing the heavy lifting in that spelling, iykyk 🫶) For supported file types see PLUGINS:2dimage/io.
• -t, --vertical==(output); io — the verTical correlation output file name. For supported file types see PLUGINS:2dimage/io.
• -k, --skip==2 — skip this many images at the beginning of the series.
• -e, --end==60 — the last image in the series.

🎀 Help & Info

• -V, --verbose==warning — verbosity of output; print messages of given level and higher priorities. The supported priorities, starting at the lowest level, are:
  • trace - Function call trace
  • debug - Debug output
  • info - Low level messages
  • message - Normal messages
  • warning - Warnings
  • fail - Report test failures
  • error - Report errors
  • fatal - Report only fatal errors
• --copyright — print copyright information.
• -h, --help — print this help.
• -?, --usage — print a short help.
• --version — print the version number and exit.

🧚 Processing

• --threads==-1 — Maxiumum number of threads to use for processing. This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation). Let the machine cook, bestie.

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🌈 PLUGINS: 2dimage/io 🌈

These are all the file-type besties your input/output names can be. Pick your fighter:

• bmp — BMP 2D-image input/output support. The plug-in supports reading and writing of binary images and 8-bit gray scale images. read-only support is provided for 4-bit gray scale images. The color table is ignored and the pixel values are taken as literal gray scale values.
  • Recognized file extensions: .BMP, .bmp
  • Supported element types:
    • binary data, unsigned 8 bit
• datapool — Virtual IO to and from the internal data pool.
  • Recognized file extensions: .@
• dicom — 2D image io for DICOM.
  • Recognized file extensions: .DCM, .dcm
  • Supported element types:
    • signed 16 bit, unsigned 16 bit
• exr — a 2dimage io plugin for OpenEXR images.
  • Recognized file extensions: .EXR, .exr
  • Supported element types:
    • unsigned 32 bit, floating point 32 bit
• jpg — a 2dimage io plugin for jpeg gray scale images.
  • Recognized file extensions: .JPEG, .JPG, .jpeg, .jpg
  • Supported element types:
    • unsigned 8 bit
• png — a 2dimage io plugin for png images.
  • Recognized file extensions: .PNG, .png
  • Supported element types:
    • binary data, unsigned 8 bit, unsigned 16 bit
• raw — RAW 2D-image output support.
  • Recognized file extensions: .RAW, .raw
  • Supported element types:
    • binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit
• tif — TIFF 2D-image input/output support.
  • Recognized file extensions: .TIF, .TIFF, .tif, .tiff
  • Supported element types:
    • binary data, unsigned 8 bit, unsigned 16 bit, unsigned 32 bit
• vista — a 2dimage io plugin for vista images.
  • Recognized file extensions: .-, .V, .VISTA, .v, .vista
  • Supported element types:
    • binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit

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⭐ EXAMPLE ⭐

Evaluate the time-intensity correaltions for an image series imageXXXX.png starting at image 2 and stop at image 30. Store the results in horizontal.exr, and vertical.exr.

mia-2dseriescorr -i image0000.png -k 2 -e 30 -z horizontal.exr -t \
       vertical.exr

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👑 AUTHOR(s) 👑

Gert Wollny

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💜 COPYRIGHT 💜

This software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option --copyright.

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and that's the whole page, bestie — every flag, every plugin, every little detail, preserved and served with glitter. ✨ 💖

this was mia-2dseriescorr(1) from the USER COMMANDS section, version v2.4.7 — mwah, slay, periodt. 🎀🦋💅