MAPPING_TO_PHANDANGO(1)

💖 MAPPING_TO_PHANDANGO 💖

okay so bestie, welcome to the mapping_to_phandango(1) page — it lives in the User Commands section of the manual and it's here to help you make a plot file for visualisation in phandango. yes, that's the whole job. she's simple, she's effective, she ate 💅

✨ NAME ✨

mapping_to_phandango — create a plot file for visualisation in phandango 🌈

🦋 SYNOPSIS 🦋

mapping_to_phandango -s <sam_file> -k <seer_kmers> > phandango.plot

like... that's it. that's the whole vibe. run it, redirect the output, boom 💥

🌸 DESCRIPTION 🌸

Creates a plot file for visualisation in phandango. periodt. that's literally the entire mission statement, no notes 👑

🎀 OPTIONS 🎀

💜 Required

these ones are NOT optional bestie, you gotta bring them or nothing happens 😭

• -s, --sam — Sam file of kmers mapped to reference (unsorted). yeah, unsorted, we don't gatekeep how you sort your life.
• -k, --kmers — Kmers that were mapped. the actual kmers, the little guys, the main characters 🧚

⭐ Optional

the extras, the accessories, the little cherry on top 🍓

• -m, --map — Minimum mapping quality. set your bar, queen 👑
• -h, --help — Displays this message. the classic. the icon. when in doubt, ask for help 💀

👑 AUTHOR 👑

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program. we love a generous king, fr fr 🫶

no cap, that's the whole page. go make some phandango plots, bestie 🌈✨

mapping_to_phandango 1.1.2 · March 2017 — mwah, that's a wrap, ily, go slay 💅🎀🦋