MAPMERS-DEPTH(1)

🌸 ok bestie, welcome to mapMers-depth(1) — User Commands energy 🌸

💖 NAME 💖

mapMers-depth — she reports information about mapping kmers to sequences. that's the whole assignment, and she ate. 💅

✨ SYNOPSIS ✨

mapMers-depth-depth {-count|-depth|-stats} -mers MERYL -m MERSIZE
-seq IN.FASTA

🎀 OPTIONS 🎀

💅 Modes of operation

ok so picture this: you've got a sequence ordinal s and a position inside that sequence p. that's the whole coordinate system, bestie. now pick your girl:

• -count — reports the count (c) of the single kmer that starts at position (p).

Format: 's p c'

• -depth — reports the number (n) of kmers that span position (p).

Format: 's p n'

• -stats — reports the minimum (m), maximum (M), and average (a) count of all mers that span position (p). she also reports total count (t) and number of kmers (n), because she's generous like that. 👑

Format: 's p m M a t n'

🌈 General

• -m MERSIZE — the mersize. that's it. that's all the page gives us 🙈 no cap, she's keeping it mysterious.
• -mers MERYL — the meryl(1) database. yep, meryl is doing the heavy lifting here, iykyk.
• -seq IN.FASTA — the fasta input sequence. your raw material, your main character. 🦋

🔥 SEE ALSO 🔥

• meryl(1)
• mapMers(1)

go read those too, bestie, they're literally right there. ✨

no notes, no cap — just kmers getting mapped and positions getting reported. 💀

this page is mapMers-depth 0~20150520+2004, and it's dated May 2015 — so like, vintage but still iconic. mwah, bye bestie, go count some mers 💖🎀🫶