LTRSIFT(1)

💖 LTRSIFT(1) — the manual, but make it cute 💖

okay bestie, gather round, because this is the page for ltrsift, section 1 of the manual, and it's genuinely iconic. it's a whole graphical desktop moment. let's get into it 🦋

✨ NAME ✨

ltrsift — a graphical interface for postprocessing and classification of LTR retrotransposon candidates 🧬👑

🌸 SYNOPSIS 🌸

ltrsift

that's it. that's the whole synopsis. no flags, no arguments, just vibes 💅

🎀 DESCRIPTION 🎀

so LTRsift is a graphical desktop tool for semi-automatic postprocessing of de novo predicted LTR retrotransposon annotations. think of the ones that LTRharvest and LTRdigest spit out — yeah, those. LTRsift is here to help you deal with them like the main character you are ✨

🫶 CONFIGURATION 🫶

okay so, housekeeping, but make it cute:

• the LAST binaries (<code>lastal</code> and <code>lastdb</code>) should be chilling in the system search path. that's the default, that's the dream 🌈
• if they're not in the search path, no panic — you can specify where they live using the GT_LAST_PATH environment variable before you run LTRsift. set it up first, then launch, periodt 💜
• same deal for the BLAST location, fr fr. use GT_BLAST_PATH to specify the full path to the blastall executable 🔥
• style files — the ones that describe how the linear diagram of the candidate features looks — can be set via the LTRSIFT_STYLE_FILE environment variable 🎨
• and if you don't set one? don't even worry. a sensible default style is built right into LTRsift 😌 she comes prepared 💖

💌 AUTHOR 💌

report bugs to <steinbiss@zbh.uni-hamburg.de> 🐛🫶 be nice, be specific, include the receipts iykyk

ngl, that email is the only contact info on this whole page, so if something's giving broken, that's where it goes 🙈

and that's the whole page, bestie!! 🎉 this one's from 10/07/2012 and it's LTRSIFT(1) — an absolute classic, lowkey a little vintage, but we love her 💀💖 slay, go postprocess some retrotransposon candidates 🧬✨👑