KTIMPORTMGRAST(1)

👑 KTIMPORTMGRAST(1) — the manual page, but make it cute

okay so bestie, welcome to ktImportMGRAST, a User Commands moment ✨ (it lives in section 1 of the manual, iykyk). Grab a snack, we're building zoomable pie charts out of metagenomic data and it's gonna be adorable.

🌸 NAME 🌸

ktImportMGRAST — explore hierarchical metagenomic data with zoomable pie charts 🥧🦋

✨ DESCRIPTION ✨

Creates a Krona chart from MG-RAST organism or functional analyses. literally that's the whole vibe, it takes your MG-RAST output and turns it into a gorgeous interactive chart 💖

ktImportMGRAST \

       [options] \ mgrast_table_1[,name_1] \ [mgrast_table_2[,name_2]] \
       ...

Here's the tea on every piece of that synopsis, no cap 🫖:

• mgrast_table — A table exported from MG-RAST. It can be from organism or functional analysis, but all tables being imported should be consistent. By default, separate datasets will be created for each input (see [-c]). so like… don't mix and match, bestie, pick a lane 💅
• name — A name to show in the list of datasets in the Krona chart (only if multiple input files are present and [-c] is not specified). By default, the basename of the file will be used. it's giving "let me label my children" 🎀

🔥 OPTIONS 🔥

Every single flag, coming right up, and yes we're doing all of them 👑

• -o <string> — Output file name. [Default: 'mg-rast.krona.html'] — name your baby 🍼
• -n <string> — Name of the highest level. [Default: 'all'] — the top of the hierarchy, the main character of the whole chart 👑
• -c — Combine data from each file, rather than creating separate datasets within the chart. one big happy family 🫶
• -d <integer> — Maximum depth of wedges to include in the chart. how deep are we going?? 🙈
• -x <integer> — Hue (0-360) for "bad" scores. [Default: '0'] — red-flag energy, literally 💀
• -y <integer> — Hue (0-360) for "good" scores. [Default: '120'] — green-flag energy, we love to see it 🌈
• -p — Use percent identity for average scores instead of log[10] e-value. swap the math, slay ✨
• -u <string> — URL of Krona resources to use instead of bundling them with the chart (e.g. "http://krona.sourceforge.net"). Reduces size of charts and allows updates, though charts will not work without access to this URL.

⚠️ bestie listen — that last one is a real trade-off, not a flex. Smaller charts + updates = yes, but if you can't reach that URL, the chart just… won't work. no notes, that's just how it is 😭

🎀 a lil sign-off 🎀

That's the whole page, bestie! This one's ktImportMGRAST version 2.8, and it was dated June 2021 — an icon, a legend, and the moment. go forth and chart your metagenomes 💖✨🧚