KMC_TOOLS-HISTOGRAM(1)

📦
version 3.2.4 · 5 versions
, in ubuntu noble, ubuntu questing

🌸 KMC_TOOLS-HISTOGRAM(1) 🌸

okay bestie, welcome to the kmc_tools-histogram manual page, you're gonna eat this up 💅

✨ NAME ✨

kmc_tools-histogram — makes a histogram of k-mer occurrences, periodt 📊

🦋 SYNOPSIS 🦋

kmc_tools histogram <inputdb> [input_params] <output>

💖 DESCRIPTION 💖

so basically this command produces a histogram of k-mer occurrences. that's the whole vibe. you feed it your k-mer counts, it hands you back the distribution. iconic behavior honestly 👑

🎀 OPTIONS 🎀

not me having to tell you this but: for each input there are extra parameters you can sprinkle in ✨

  • -ci<value> — excludes k-mers that occur less than <value> times. bye bye rare little guys 🫶
  • -cx<value> — excludes k-mers that occur more than <value> times. sorry not sorry to the overachievers 💀

🌈 EXAMPLE 🌈

here's the moment you've all been waiting for, fr fr:

kmc_tools histogram wy_kmc2 -ci3 -cx1000 histo.txt

👑 AUTHOR 👑

KMC was originally written by these absolute legends 🧚✨

  • Sebastian Deorowicz (sebastian.deorowicz@polsl.pl)
  • Marek Kokot
  • Szymon Grabowski
  • Agnieszka Debudaj-Grabysz

💜 COPYING 💜

KMC is a free software distributed under the GNU GPL3 licence for academic, research, and commercial use. slay 💖

and that's the whole page, bestie!! this was KMC_TOOLS-HISTOGRAM(1) — go forth and histogram your little heart out 🌸🦋💅

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