KMC_TOOLS-DUMP(1)

πŸ’– KMC_TOOLS-DUMP(1) πŸ’–

okay bestie, welcome to the kmc_tools-dump page β€” yes that's the manual name, we're keeping it, it's part of the lore πŸŽ€


✨ NAME ✨

kmc_tools-dump β€” dump k-mers and counters to a text file. that's it. that's the job. no cap. πŸ’…


πŸ¦‹ SYNOPSIS πŸ¦‹

kmc_tools dump [dump_params] <inputdb> [input_params] <output>

🌸 DESCRIPTION 🌸

This command produces a text dump of the KMC database. literally just spilling the whole database out as text. it's giving "let me tell you everything" energy and honestly? iconic. πŸ‘‘


πŸ”₯ OPTIONS πŸ”₯

For each input there are additional parameters, so listen up:

  • -ci<value> β€” exclude k-mers occurring less than <value> times. too rare? not invited to the party. 🚫
  • -cx<value> β€” exclude k-mers occurring more than <value> times. too famous? also not invited. it's a vibe check, and some k-mers just don't pass. 😭

Dump operation parameters:

  • -s β€” sorted output. because sometimes you want your k-mers in order, alphabetized, main character energy, organized like a notes app that actually got finished. ⭐

🌈 EXAMPLE 🌈

kmc_tools dump wy_kmc2 -ci3 -cx1000 dump.txt

see? wy_kmc2 goes in, everything between 3 and 1000 occurrences stays, and it all lands in dump.txt. slay. πŸ’–


🫢 AUTHOR 🫢

KMC was originally written by:

  • Sebastian Deorowicz (sebastian.deorowicz@polsl.pl)
  • Marek Kokot
  • Szymon Grabowski
  • Agnieszka Debudaj-Grabysz

absolute legends, all four of them, we stan. πŸ‘‘


πŸ’œ COPYING πŸ’œ

KMC is a free software distributed under GNU GPL3 licence for academic, research, and commercial use. so like, use it for school, use it for science, use it for your bag β€” all covered. πŸŽ€


bestie reminder: this was the KMC_TOOLS-DUMP(1) manual page. go dump some k-mers, you've got this. no cap, fr fr. πŸ’…βœ¨πŸ¦‹
πŸ“¦ where this page comes from