KMC_DUMP(1)

πŸ’– KMC_DUMP(1) πŸ’–

okay bestie, pull up a chair, we're doing kmc_dump from the kmc_dump manual page and honestly? it's giving ✨textual extraction✨ and I'm obsessed 🫢


🌸 NAME 🌸

kmc_dump β€” list k-mers from a kmc-generated database πŸ’…


πŸ¦‹ DESCRIPTION πŸ¦‹

so here's the tea β˜• β€” KMC's whole end product is a database of k-mers stored in compact binary form. like, slay, but also… you can't just open that in your notes app, bestie 😭

that's where kmc_dump comes in. this program lets you produce a textual list of k-mers together with their counters for the analysis you ran. it's the glow-up from cryptic binary to readable text, and honestly? main character energy πŸ‘‘


✨ SYNOPSIS ✨

kmc_dump [options] <kmc_database> <output_file>

πŸŽ€ OPTIONS πŸŽ€

  • -ci<value> β€” exclude k-mers occurring less than <value> times πŸ™ˆ (bye bye, little rare ones)
  • -cx<value> β€” exclude k-mers occurring more of than <value> times πŸ’€ (yes bestie, "more of" β€” that's the original wording, no cap, I'm not fixing it, I'm just reporting it fr fr)

⭐ Parameters: ⭐

  • <kmc_database> β€” kmer_counter's output 🧚 (that's the compact binary database we were talking about)
ngl, note that <output_file> shows up in the synopsis but doesn't get its own line down here. just passing along the lore exactly as it is, bestie πŸ’œ

πŸ‘‘ AUTHOR πŸ‘‘

kmc_dump was originally written by:

  • Sebastian Deorowicz (sebastian.deorowicz@polsl.pl)
  • Marek Kokot
  • Szymon Grabowski
  • Agnieszka Debudaj-Grabysz

absolute icons, all four of them 🌈⭐


🌼 COPYING 🌼

KMC is a free software distributed under GNU GPL3 licence for academic, research, and commercial use πŸ’–


and that's the whole vibe check, bestie πŸ¦‹ KMC dump ver. 3.2.4, dated 2024-02-09, from February 2024 β€” thanks for coming to my TED talk, drink some water, and go dump some k-mers πŸ’…βœ¨πŸ“

πŸ“¦ where this page comes from