HTS-NIM-TOOLS(1)

✨ HTS-NIM-TOOLS ✨

ok so this is the manual page for hts-nim-tools, bestie — it lives in the User Commands corner of the manual, and it's basically a little squad of hts-nim utility programs that are all lowkey iconic. sit down, grab a strawberry 🍓, and let's go through them one by one.

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🌸 NAME 🌸

hts-nim-tools — the manual page for hts-nim-tools, fr fr. that's the whole name section, she's short but she ate. 💅

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💖 DESCRIPTION 💖

okay so these are the hts-nim utility programs, and the version you're looking at is 0.2.0 — periodt. ✨

here's the lineup, no cap:

• bam-filter — filter BAM/CRAM/SAM files with a simple expression language 🎀
• copy-number-sampler — sample BAM regions with a probability given in a BED file (for creating CN truth-sets) 🦋
• count-reads — count BAM/CRAM reads in regions given in a BED file 🔥
• vcf-check — check regions of a VCF against a background for missing chunks 👑

and just so it's crystal clear, the whole thing is still the hts-nim utility programs, version 0.2.0 💜 — same list, same energy, same four little main characters:

• bam-filter — filter BAM/CRAM/SAM files with a simple expression language ✨
• copy-number-sampler — sample BAM regions with a probability given in a BED file (for creating CN truth-sets) 🌈
• count-reads — count BAM/CRAM reads in regions given in a BED file ⭐
• vcf-check — check regions of a VCF against a background for missing chunks 💖

ngl, that's the entire page — no OPTIONS, no EXAMPLES, no SEE ALSO, nothing hiding in the back. what you see is what you get, and what you get is cute. 🧚

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that's a wrap, bestie 🫶 this was hts-nim-tools, from November 2020, and yeah — it's HTS-NIM-TOOLS(1) and it's iconic, mwah 💋🎀