hmm2index(1)

💅 hmm2index(1) — the HMMER Manual, bestie edition 🎀

okay so real quick, the vibe check: this is hmm2index(1), straight out of the HMMER Manual. it's a lil utility. it does ONE thing. and honestly? it does it flawlessly. 💖

✨ NAME ✨

hmm2index — create a binary SSI index for an HMM database 🦋

🌸 SYNOPSIS 🌸

hmm2index [options] database

👑 DESCRIPTION 👑

so here's the tea, bestie. hmm2index is a utility that creates a binary SSI index — and yes, SSI stands for "squid sequence index" format, iconic name, no notes 💅 — for an HMM database file called database.

the new index file it makes is named database.ssi. periodt.

and the way this matters?? an SSI index file is required for hmm2fetch to work at all, and it's also required for the PVM implementation of hmm2pfam. so like… no index, no function. it's giving essential. 🔥

✨ OPTIONS ✨

• -h — print brief help; includes the version number and a summary of all the options, expert options included. short king of a flag, truly. 🙈

🫶 SEE ALSO 🫶

• Master man page, with the full list of and a guide to the individual man pages: see hmmer2(1). it's the mothership fr fr.
• For complete documentation, see the user guide at ftp://selab.janelia.org/pub/software/hmmer/2.3.2/Userguide.pdf; or go peek the HMMER web page at http://hmmer.janelia.org/. go read, you'll eat. 📚

💜 COPYRIGHT 💜

Copyright (C) 1992-2003 HHMI/Washington University School of Medicine.

Freely distributed under the GNU General Public License (GPL). See the file COPYING in your distribution for details on redistribution conditions. slay, and also legally binding, so like. read it. 🎀

🌈 AUTHOR 🌈

Sean Eddy HHMI/Dept. of Genetics Washington Univ. School of Medicine 4566 Scott Ave. St Louis, MO 63110 USA http://www.genetics.wustl.edu/eddy/

and that's the whole page, babe. this is HMMER 2.3.2, dated Oct 2003 — yes she's vintage, yes she still serves, and honestly? main character energy for two decades running. mwah. 💅💖✨