GRAPHLAN_ANNOTATE(1)

💖 GRAPHLAN_ANNOTATE — the annotate module of GraPhlAn, bestie 💖

okay so real quick, the manual name is graphlan_annotate and it lives in section 1 of the user commands, and honestly? she's iconic. let's get into it 🫶

✨ NAME ✨

graphlan_annotate — the GraPhlAn annotate module 🎀

🌈 SYNOPSIS 🌈

graphlan_annotate [-h] [--annot annotation_file] [-v] input_tree
[output_tree]

that's it. that's the whole vibe check. two positional cuties and a couple of flags, no cap 💅

🦋 DESCRIPTION 🦋

so GraPhlAn is this software tool that makes high-quality circular representations of taxonomic and phylogenetic trees 🌳✨ and like, its whole thing — its main character energy, fr fr — is producing concise, integrative, informative and publication-ready representations of phylogenetically- and taxonomically-driven investigation. periodt. 💅

and graphlan_annotate? she's the annotate module of graphlan(1). the annotation queen. the one who adds the little extras onto your tree so it eats. 🔥

🌸 OPTIONS 🌸

🧚 positional arguments:

• input_tree — the input tree, and she accepts it in Newick, Nexus, PhyloXML or plain text format. so many options, we love a flexible queen 👑
• output_tree — the output tree, written in PhyloXML format, and it contains all the newly added annotations 🎀. but listen — if you don't specify it, the input tree file will be overwritten. yes literally overwritten. so maybe double-check before you hit enter, bestie 😭

⭐ optional arguments:

• -h, --help — show this help message and exit. classic. the "help me help me" flag 🙈
• --annot annotation_file — specify the annotation file. this is kind of her whole job tbh ✨
• -v, --version — prints the current GraPhlAn version and exit. version check, slay 👑

👀 SEE ALSO 👀

• graphlan(1) — her sister, her origin story, iykyk 🫶

💜 AUTHOR 💜

the software was written by Nicola Segata <nsegata@hsph.harvard.edu> 🌟

this manpage was written by Andreas Tille for the Debian distribution, and it can be used for any other usage of the program. so generous, so giving 🎀

🍓 sign-off 🍓

and that's the whole page, bestie!! this is graphlan_annotate version 1.1, dated June 2016 — vintage but still serving 💖 go annotate something gorgeous and make your tree the moment. no cap. 🌈✨💅