GRAPHLAN(1)

💖 GRAPHLAN 💖

okay bestie, so this is the manual page for graphlan, living in the User Commands section of the manual. yes, section 1. we're doing this. 🎀

✨ NAME ✨

graphlan — circular representations of taxonomic and phylogenetic trees 🌳🌈

🦋 SYNOPSIS 🦋

graphlan [-h] [--format ['output_image_format']] [--warnings WARNINGS]
[--positions POSITIONS] [--dpi image_dpi] [--size image_size] [--pad
pad_in] [--external_legends] [-v] input_tree output_image

👑 DESCRIPTION 👑

so, GraPhlAn is literally the software tool for making high-quality circular representations of taxonomic and phylogenetic trees. that's the whole thing. that's the assignment. 💅

and the vibe? it's all about concise, integrative, informative, and publication-ready representations of phylogenetically- and taxonomically-driven investigation. iykyk. 📊✨

🌸 OPTIONS 🌸

🫶 positional arguments:

• input_tree — the input tree, in PhyloXML format. that's your tree. your whole tree. give it to her. 🌲
• output_image — the output image. the format gets guessed from the extension, unless you passed --format. available file formats are: png, pdf, ps, eps, svg 🎨

💅 optional arguments:

• -h, --help — shows this help message and then dips. exit stage left. 🚪✨
• --format ['output_image_format'] — sets the format of the output image (default is none, meaning the format is guessed from the output file extension). not me letting the file extension decide my whole identity 😭
• --warnings WARNINGS — sets whether warning messages should be reported or not (default 1). yes queen, tell me the tea or don't. 💀
• --positions POSITIONS — sets whether the absolute position of the points should be reported on the standard output. the two coordinates are r and theta. polar besties rise up 🌀
• --dpi image_dpi — the dpi of the output image, for non vectorial formats. pixels on pixels on pixels. 🔍
• --size image_size — the size of the output image, in inches (default 7.0). seven inches of pure art. 🎀
• --pad pad_in — the distance between the most external graphical element and the border of the image. personal space matters, even for graphs. 🫧
• --external_legends — specify whether the two external legends should be put in separate file or keep them along with the image (that's the default behavior). two legends, one legend, choose your fighter 👯
• -v, --version — Prints the current GraPhlAn version and exit. short, sweet, iconic. 👑

💜 AUTHOR 💜

The software was written by Nicola Segata <nsegata@hsph.harvard.edu> — absolute legend, no cap. 🌟

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program. giving credit where credit is due, always. 🫶

okay bestie that's the whole page, go make some gorgeous circular trees, you've got this 🌈💖 and just so you know who's signing off: this is graphlan 1.1, dated June 2016. slay, periodt. 👑✨