GMX-SIGEPS(1)

✨ gmx-sigeps ✨

okay bestie, so you know gmx-sigeps(1)? that's the GROMACS manual page we're vibing in rn πŸ’– it's a tiny lil utility and honestly? it ate.


🌸 NAME 🌸

gmx-sigeps β€” the one that converts c6/12 or c6/cn combos to and from sigma/epsilon πŸ¦‹


πŸŽ€ SYNOPSIS πŸŽ€

gmx sigeps [-o [<.xvg>]] [-[no]w] [-xvg <enum>] [-c6 <real>]
           [-cn <real>] [-pow <int>] [-sig <real>] [-eps <real>]
           [-A <real>] [-B <real>] [-C <real>] [-qi <real>]
           [-qj <real>] [-sigfac <real>]

like yes, that's a lot of brackets, but she's worth it, i promise 🫢


πŸ‘‘ DESCRIPTION πŸ‘‘

gmx sigeps is a simple utility (her words, not mine) that converts C6/C12 or C6/Cn combinations to sigma and epsilon, or vice versa. πŸ” so it goes both ways, we love a versatile icon.

she can also plot the potential into a file. ✨ and and and β€” plot twist β€” she makes an approximation of a Buckingham potential to a Lennard-Jones potential. it's giving scientist. it's giving range. πŸ’…


🌈 OPTIONS 🌈

πŸ’Ύ Options to specify output files

  • -o [<.xvg>] (default: potje.xvg) β€” xvgr/xmgr file πŸ“ˆ that's where the plot goes, bestie.

🧚 Other options

  • -[no]w (default: no) β€” View output .xvg, .xpm, .eps and .pdb files. yes she'll literally open them for you, main character energy.
  • -xvg <enum> (default: xmgrace) β€” xvg plot formatting. your choices are: xmgrace, xmgr, none. pick your fighter πŸ₯Š
  • -c6 <real> (default: 0.001) β€” C6 πŸ’«
  • -cn <real> (default: 1e-06) β€” Constant for repulsion πŸ›‘οΈ
  • -pow <int> (default: 12) β€” Power of the repulsion term ⚑
  • -sig <real> (default: 0.3) β€” sigma 🌸
  • -eps <real> (default: 1) β€” epsilon πŸ“
  • -A <real> (default: 100000) β€” Buckingham A πŸ…°οΈ
  • -B <real> (default: 32) β€” Buckingham B πŸ…±οΈ
  • -C <real> (default: 0.001) β€” Buckingham C 🌟
  • -qi <real> (default: 0) β€” qi 🀍
  • -qj <real> (default: 0) β€” qj πŸ–€
  • -sigfac <real> (default: 0.7) β€” Factor in front of sigma for starting the plot 🎬

πŸ” SEE ALSO πŸ”

gmx(1) β€” go say hi to the parent 🫢

More information about GROMACS is available at <‐ http://www.gromacs.org/.


2026, GROMACS development team. slay, royalties, etc. πŸ‘‘


no cap, every single flag above is doing a job. don't skip the boring-looking ones, they will humble you 😭

and that's the whole page, bestie!! ✨ officially GROMACS version 2026.4 β€” dated Oct 02, 2026 β€” which means it's basically a time traveler, and it's still serving. bye ily, go convert some sigmas πŸ’…πŸ¦‹πŸ’–

πŸ“¦ where this page comes from