gfapy-renumber(1)

📦
version 1.2.3 · 4 versions
, in debian bookworm, ubuntu noble

💖 gfapy-renumber 💖

okay bestie, gather round, because this is the gfapy-renumber manual page and she is serving. it's a lil command-line tool from the gfapy fam (v 1.2.3+dfsg, if you were wondering) and she has exactly one job, which she does flawlessly. no notes. 💅

✨ NAME ✨

gfapy-renumber — renumber the segments of a GFA assembly graph 🧬

like... that's it. that's the whole girl. she renumbers your segments. iconic behavior honestly.

🌸 SYNOPSIS 🌸

gfapy-renumber [-h] [-o] [--version] gfa

yes, that's really all there is to type. one little gfa argument at the end and she's off. 🦋

💜 DESCRIPTION 💜

so here's the vibe: you hand her a GFA assembly graph, and she goes through the segments and gives them all new names, ranked by size. the largest segment gets renamed to 01, and it counts all the way down to the smallest segment at 99. biggest gets the best number, smallest gets the last one, main character energy all the way down the list. 👑

and the zero-padding? she's not gonna make you do math, bestie. the amount of zero-padding required is determined automatically. so if your graph needs 001 through 099, she just... knows. lowkey genius behavior. ✨

🎀 OPTIONS 🎀

  • -h, --help — show help message and exit. your lil "wait what does this do again" button, no judgment 🫶
  • -o, --out — output GFA file (default stdout). so if you don't pass this, she just prints everything straight to stdout and you can pipe it wherever your heart desires. passing it sends the output to a file instead. 🌈
  • --version — show program's version number and exit. for when you need to know exactly which queen you're talking to 💖
no cap, every flag above is the full list. -h, -o/--out, --version, and the gfa argument. that's the whole menu, and honestly? a minimalist. we respect it. 🌸

🌟 a lil sign-off 🌟

that's the page, bestie! this lil beauty comes to you from gfapy 1.2.3+dfsg, dated 04 December 2022, and she's filed under gfapy-renumber(1) in the manual. go forth and renumber your segments, you absolute legend. 💖✨🎀🦋💅

📦 where this page comes from