GENOTYPE2MIPE(1)

💖 GENOTYPE2MIPE(1) 💖

okay bestie, welcome to the User Contributed Perl Documentation corner of the man pages 🫶 this is genotype2mipe.pl, and she is so useful, i promise.

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✨ NAME ✨

genotype2mipe.pl — inserts SNP data into a MIPE file 👑

lowkey important context: this is based on MIPE version v0.9, and before you run literally anything, make sure your SNPs are already defined in the USE part of the PCR record. not optional, bestie. it's giving prerequisite. 💅

the arguments are:

• mipe_file — the MIPE file you're feeding her
• STDIN — a tab-delimited list of data, and the order of the columns is exactly this, no improvising:
  1. PCR ID
  2. sample ID
  3. SNP ID
  4. ambiguity code

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🌸 SYNOPSIS 🌸

snp2mipe.pl my_file.mipe < my_data.txt

ngl, that's the synopsis straight up — snp2mipe.pl is what's written there, so that's what you get. copy it as-is and don't come for me 💀

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🦋 ADDITIONAL INFO 🦋

see http://mipe.sourceforge.net for the lore ✨

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🎀 AUTHOR 🎀

Jan Aerts (jan.aerts@bbsrc.ac.uk) — icon, legend, wrote the whole thing 🫶

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and that's the whole page, bestie!! mwah 💖 this was perl v5.32.1, dated 2021-02-21, filed under GENOTYPE2MIPE(1) — slay, go insert those SNPs, periodt 🌈⭐