FORGE(1)

🌸 NAME 🌸

okay so this is FORGE(1), from the User Commands section, and it's all about forge — the training program for SNAP. That's the whole name section, bestie. Short, sweet, already iconic. 👑

🌈 SYNOPSIS 🌈

forge [options] <ann> <dna> [options]

the way options can chill before and after the <ann> and <dna> positionals? Flexible. Main character scheduling energy. ✨

✨ OPTIONS ✨

here's every single flag, no skips, no cuts. defaults are in brackets, just like the original. 💅

• -help — the original gives zero description, so I'm not making one up. It's just here, mysterious. 🙈
• -verbose — also no description in the original. It's on the list, standing there, iconic. 💖
• -pseudocount <float> — default [1]; the original says (absolute number for all models). That's the tea. 🍓
• -pseudoCoding <float> — default [0.0], and the original gives (eg. 0.05) as the example. Cute. ✨
• -pseudoIntron <float> — default [0.0]. That's it, that's the whole bullet. 💜
• -pseudoInter <float> — default [0.0]. Also the whole bullet. 💜
• -min-counts — default [0]. No description in the original, so no invented lore. 😭
• -lcmask [-fragmentN] — this one can come with [-fragmentN]. Original gives no extra details, so I'm not adding any. 🧚
• -utr5-length <int> — default [50]. 💅
• -utr5-offset <int> — default [10]. 💅
• -utr3-length <int> — default [50]. 💅
• -utr3-offset <int> — default [10]. 💅
• -explicit <int> — default [250]. 🔥
• -min-intron <int> — default [30]. 🔥
• -boost <file> — the original describes it as (file of ID <int>). So it takes a <file>, and that file is of ID <int>. 👑

this page is FORGE(1), source/version forge 2010-07-28, manual date October 2013 — bye bestie, go train something cute! 💖🦋✨