FIND-IN-GENE(1)

✨ FIND-IN-GENE(1) ✨

okay bestie, welcome to the NCBI Entrez Direct User's Manual 💖 this little icon lives in there and honestly? she's doing the most with the least. let's get into it 🫶

🌸 NAME 🌸

find-in-gene — literally just lists the names of genes that overlap a range 💅

🎀 SYNOPSIS 🎀

find-in-gene strand start stop length

four little arguments, that's the whole vibe, no flags, no drama, no notes ✨

🦋 DESCRIPTION 🦋

so here's the tea 🍓: find-in-gene sits there reading XML data off of standard input — and specifically the format that gene2range produces, so like, she's expecting to be piped into, okay? 😌

then she prints to standard output a list of gene names — one per line 👑 — but only the ones where:

• the gene's interval overlaps the overall range you specified, and
• the gene has the strand you specified

that's it. that's the whole function. she's lowkey iconic for it 🔥

💜 SEE ALSO 💜

• fuse-ranges(1)
• gene2range(1)
• xtract(1)

go read those too, they're her besties 🧚

that's the whole page, you ate it, no crumbs 🌈 this was brought to you by NCBI, dated 2023-02-05, straight out of the NCBI Entrez Direct User's Manual — mwah, ily, bye 💖💅✨