FILTER_SEER(1)

💖 FILTER_SEER(1) 💖

okay bestie, so filter_seer is a lil command-line icon from the User Commands corner of the manual, and she is here to do exactly one job and do it gorgeously. pull up a chair 🫶

✨ NAME ✨

filter_seer — post filtering of significant kmers 💅

🌸 DESCRIPTION 🌸

Post filtering of significant kmers. that's it, that's the whole vibe. she takes your kmers that already passed the significant check and filters them again, because sometimes you gotta gatekeep a little. no cap.

This program belongs to seer(1) (Sequence Element (kmer) Enrichment Analysis). so like, seer is the main character, and filter_seer is her extremely capable best friend who handles the afterparty 🎀

🦋 OPTIONS 🦋

👑 Required options:

• -k, --kmers arg — the file of output from seer. yes queen you literally cannot run this without her. no -k, no vibes.

💅 Filtering options:

• --chisq arg — minimum unadjusted p-value to output. anything below this threshold does not make the cut, sorry babe.
• --pval arg — minimum adjusted p-value to output. same energy, but the adjusted one.
• --maf arg — minimum maf / max 1-maf to output.
• --beta arg — minimum |beta| to output. absolute value only, we don't do negative energy here.
• --substr — remove smaller kmers that are completely represented elsewhere. bye bye redundant lil guys 🙈
• --pos_beta — output positive effect sizes only. only the up, never the down. it's giving optimistic ✨

🌈 Other options:

• -s, --sort arg — the field to sort on: chisq, pval, maf or beta. pick your fave and she'll line them up pretty.
• -h, --help — full help message. when in doubt, ask for help, that's literally self care 💜

🎀 AUTHOR 🎀

This manpage was written by Andreas Tille for the Debian distribution, and can be used for any other usage of the program. iconic behaviour honestly, thank you Andreas 🫶

ok that's the whole page bestie, go filter some kmers and slay 💖

filter_seer version 1.1.2, dated March 2017 — yeah she's a lil vintage but she still ate, periodt. ⭐