fastautils(1)

💖 fastautils(1) — the FASTA bestie handbook 💖

okay so real talk, fastautils is the manual page (section 1, iykyk) for a whole girlband of FASTA format file manipulation utilities, and they all ship together with the exonerate sequence alignment program. yes bestie, one page, twenty-one little icons. let's go 🦋

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✨ SYNOPSIS ✨

like, here's the whole lineup, no cap:

fastachecksum [ options ] <input file>

fastaclean

fastaclip

fastacomposition

fastadiff

fastaexplode

fastafetch

fastahardmask

fastaindex

fastalength

fastanrdb

fastaoverlap

fastareformat

fastaremove

fastarevcomp

fastasoftmask

fastasort

fastasplit

fastasubseq

fastatranslate

fastavalidcds

not me noticing that only fastachecksum is out here taking [ options ] and an <input file> in this synopsis — the rest are just showing up as their names. slay, honestly. 💅

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🌸 DESCRIPTION 🌸

these are utilities for the manipulation of FASTA format sequence databases, and they're distributed with the exonerate sequence alignment program. that's the whole vibe. a lil toolbox of FASTA besties. 🧚

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🎀 ENVIRONMENT 🎀

Not documented yet.

(yeah, that's literally all it says. no env vars for you today, bestie. 🙈)

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🍓 EXAMPLES 🍓

fastalength sequence.fasta

blah blah

i'm not even joking, that's the entire example. the manpage said "blah blah" and dipped. iconic behaviour tbh. 😭

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👑 VERSION 👑

this documentation accompanies version 2.2.0 of the exonerate package. ⭐

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💜 AUTHOR 💜

Guy St.C. Slater. <guy@ebi.ac.uk>.

also, check the AUTHORS file that comes along with the source code if you want the full list of contributors. 🫶

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🌈 AVAILABILITY 🌈

the source code for the exonerate package is available under the terms of the GNU general public licence.

please see the file COPYING which was distrubuted with this package, or http://www.gnu.org/licenses/gpl.txt for details.

this package has been developed as part of the ensembl project. please see http://www.ensembl.org/ for more information.

(and yes, "distrubuted" is spelled exactly like that in the original — i'm not fixing it, that's her word now 💀)

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🔥 SEE ALSO 🔥

• exonerate(1)
• e-PCR

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k bye bestie, this page is from March 2003 and it's part of the fastautils fam — that's the source and the date, all folded into one cute lil sign-off. go forth and manipulate some FASTA. 💖✨