EUFINDTRNA(1)

🌸 EUFINDTRNA(1) 🌸

okay bestie, welcome to eufindtRNA — that's the User Commands corner of the manual, and yes she's an icon, yes she finds tRNAs. let's get into it 💅

✨ NAME ✨

eufindtRNA — detection of transfer RNA genes in genomic sequence 🧬🦋

🎀 SYNOPSIS 🎀

eufindtRNA [-options] <sequence file>

like, you hand her a sequence file, you sprinkle some options on top, and she goes to work. that's the whole vibe. 💖

👑 DESCRIPTION 👑

so, real talk: this is eufindtRNA 1.1, Aug 2000. she's vintage, she's classic, she still ate. 💀✨

her whole job? Find tRNAs in eukaryotic sequences. that's it, that's the assignment. 🧬

here's every single option, no cap, nothing skipped, nothing hidden:

• -h — help. prints the version and the usage info, so you're never out here confused. 🫶
• -o <outfile> — save the tRNAs into <outfile>. your finds, your file, your rules. 💾
• -r — relaxed mode: no terminators searched for. she's chill, she's not checking. 😌
• -s — strict mode: discard tRNAs with missing terminators. no terminator, no entry, periodt. 🚫
• -l <length> — set the max intron + variable loop length. default is 140. 📏
• -X <Score> — manually set the final score cutoff to <Score>. default is -31.8. 🎯
• -I <Score> — set the cutoff for the intermediate score. default is -31.25. 🎚️
• -D — save the tRNA score components (for Debugging). the why behind the number, bestie. 🔍
• -F — don't check for uppercase or DNA alphabet. she's not doing that alphabet vibe check today. 🙈
• -i <integer> — start nucleotide numbering at <integer>. default is 1. 🔢

okay so, tiny heads up: -r and -s are lowkey opposites when it comes to terminators — one doesn't look for them at all, the other throws out anything missing them. pick your fighter. 🥊

💜 AUTHOR 💜

This manpage was written by Nilesh Patra for the Debian distribution and can be used for any other usage of the program. 🫡✨

and that's the whole page, bestie!! 🎀 this was eufindtRNA 2.0.9+ds, dated July 2021 — literally iconic, obsessed, go find some tRNAs. bye!! 🦋💖🌈