ECOGREP(1)

💖 ECOGREP(1) 💖

okay bestie, welcome to ecogrep — she's a little command-line queen from the ecoPCR package and she's here to filter your ecoPCR results 💅

✨ NAME ✨

ecogrep — filtering ecoPCR result based on taxonomic id filter and regular expression pattern 🦋

🌸 SYNOPSIS 🌸

ecogrep [options] filename

🎀 DESCRIPTION 🎀

So ecoPCR is an electronic PCR software developed by LECA and Helix-Project, and it literally helps you estimate Barcode primers quality 🔥

And this program? She belongs to the exoPCR package. Periodt. 💖

👑 OPTIONS 👑

• -1 — [FIRST] : compare the given pattern with direct strand oligonucleotide 🧬
• -2 — [SECOND] : compare the given pattern with reverse strand oligonucleotide 🔄
• -d — [D]atabase containing taxonomic information 🗂️
• -e — [E]rrors : max error allowed in pattern match (option -1, -2 and -p) — 0 by default ✨
• -p — [P]attern : oligonucleotide pattern 🌈
• -h — [H]elp : print <this> help 🫶
• -i — [I]gnore subtree under given taxonomic id 🙈
• -r — [R]estrict search to subtree under given taxomic id 🔍
• -v — in[V]ert the sense of matching, to select non-matching lines 💀

argument:

ecoPCR output file name 📄

💜 SEE ALSO 💜

http://www.grenoble.prabi.fr/trac/ecoPCR/

okay that's the whole vibe, bestie 💕 this was ecogrep 0.5.0, dated June 2015 — she's an icon, she's a legend, and she is the moment 👑✨ go filter something slay 🦋💖