DEBRUIJN(1)

πŸ’– DEBRUIJN(1) πŸ’–

okay so bestie, welcome to debruijn β€” straight out of the NCBI Tools User's Manual β€” and it is literally a de Bruijn sequence generator. main character energy fr fr. ✨


✨ NAME ✨

debruijn β€” de Bruijn sequence generator πŸ¦‹


🌸 SYNOPSIS 🌸

debruijn [-] -a str -n k

πŸ’… DESCRIPTION πŸ’…

debruijn generates β€” on standard output β€” a string over the alphabet you specify, and that string contains every possible word (aka substring) of the length you specify, exactly once. no cap, every single one, one time only. πŸ‘‘

note bestie: substrings are not taken to wrap around, so the first k-1 characters repeat at the end. that's just how it is, periodt. πŸ’€

πŸŽ€ OPTIONS πŸŽ€

a summary of options is included below. here's the lil rundown, bestie πŸ’–

  • - β€” print usage message. like, "help me help you" energy.
  • -a str β€” Alphabet. supply ncbistdaa or ncbi2na for standard alphabets, or supply your own alphabet. you do you, gorgeous. 🌈
  • -n k β€” Word size. how long are the substrings? that's the vibe check. ✨

πŸ‘‘ AUTHOR πŸ‘‘

The National Center for Biotechnology Information.


mwah πŸ’‹ this page is from the NCBI Tools User's Manual, source NCBI, dated 2004-02-07, and it's DEBRUIJN(1) in the manual section. bye bestie, go generate something iconic πŸ«ΆπŸ’–

πŸ“¦ where this page comes from