CSG_FMATCH(1)

📦
version 2025.1 · 3 versions
, in debian trixie, fedora 43, fedora 44, ubuntu questing, ubuntu resolute

💖 CSG_FMATCH 💖

okay bestie, welcome to csg_fmatch — it's a General Commands Manual page, it's part of the VOTCA package, and honestly? it's lowkey iconic. sit down, grab a strawberry 🍓, and let's get into it.

✨ NAME ✨

csg_fmatch — Part of the VOTCA package 🫶

✨ SYNOPSIS ✨

csg_fmatch [OPTIONS]

csg_fmatch [--help]

like, that's it. that's the whole vibe. run it with options, or just beg for help 💅

✨ DESCRIPTION ✨

Perform force matching (which the cool kids also call multiscale coarse-graining). no cap, that's literally the whole job description. 👑

✨ OPTIONS ✨

Allowed options: (yes, these are the ones you're allowed to use, bestie, we're not making stuff up)

  • -h, --help — display this help and exit. the classic "not me panicking, just asking for directions" move 🙈
  • --verbose — be loud and noisy 📢
  • --verbose1 — be very loud and noisy 📢📢
  • -v, --verbose2 — be extremly loud and noisy 📢📢📢 (yes, "extremly", that's how the original spells it and we respect the original's spelling era 💀)
  • --top arg — atomistic topology file. the whole family tree of your atoms 🌸
  • --options arg — options file for coarse graining 🎀
  • --trj-force arg — coarse-grained trajectory containing forces of already known interactions 🦋

🌈 Mapping options:

  • --cg arg — coarse graining mapping and bond definitions (xml-file) ✨
  • --map-ignore arg — list of molecules to ignore separated by ; — like a block list, but for molecules 💅
  • --no-map — disable mapping and act on original trajectory. going rogue, acting on the original, main character energy 👑

🦋 Trajectory options:

  • --trj arg — atomistic trajectory file 🎀
  • --begin arg (=0) — skip frames before this time (only works for Gromacs files) — so heads up, if your files aren't Gromacs, this one's just gonna sit there looking pretty 😭
  • --first-frame arg (=0) — start with this frame ⭐
  • --nframes arg — process the given number of frames 🔥

✨ AUTHORS ✨

Written and maintained by the VOTCA Development Team <devs@votca.org> 💖

Copyright 2009-2024 The VOTCA Development Team (http://www.votca.org)

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at

http://www.apache.org/licenses/LICENSE-2.0
fr fr though: unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an AS IS BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. no take-backsies, bestie 💀

and that's the whole page, mwah 💋 — brought to you by the VOTCA Development Team and their csg_fmatch User Manual, filed under CSG_FMATCH(1), copyright 2009-2024. slay, periodt. ✨💅🫶

📦 where this page comes from