CRB-BLAST(1)

📦
version 0.6.9 · 2 versions
, in debian trixie, ubuntu noble, ubuntu resolute, ubuntu stonking

✨ CRB-BLAST ✨

okay bestie, gather round, because we're about to talk about Conditional Reciprocal Best BLAST and honestly? it's giving bioinformatics royalty. 👑

This one lives in the User Commands corner of manual 1, and it's literally called crb-blast. That's the name, that's the legend, no notes. 💅

🌸 NAME 🌸

crb-blast — Conditional Reciprocal Best BLAST 🧬✨

🦋 DESCRIPTION 🦋

so this is CRB-Blast v0.6.9 by Chris Boursnell <cmb211@cam.ac.uk> 💌 — and yes, that's the whole vibe: Conditional Reciprocal Best BLAST.

Here's how you actually run it:

USAGE: crb-blast <options>

like, that's it. that's the whole thing. simple, iconic, slayed. 🎀

🎀 OPTIONS: 🎀

okay this is the part everyone scrolls to, so let's go one by one, no skipping, we don't do that here. 💖

  • --query, -q <s> — your query fasta file. the main character file, fr fr. 🦋
  • --target, -t <s> — your target fasta file. the one your query is gonna be matched against, it's giving destined to meet. 💫
  • --evalue, -e <f> — the e-value cut off for BLAST. format it like 1e-5. (default: 1.0e-05) ⭐
  • --threads, -h <i> — how many threads you wanna run BLAST with. (default: 1) lowkey set this higher if you're impatient, just saying. 🔥
  • --output, -o <s> — the output file, as tsv. yes tsv. not csv. tsv. periodt. 💅
  • --split, -s — this one splits the fasta files into chunks, runs a bunch of blast jobs, and then combines them all back together. divide and conquer energy, honestly. 👑
  • --verbose, -v — be verbose. tell me everything, i wanna know. 🗣️
  • --version, -r — print the version and then exit. bye bestie. 🫶
  • --help, -l — show this message. hi bestie, welcome back. 💕
💀 heads up: yes, -h is threads here and -l is help. not the usual letters. do NOT assume, just read 'em, iykyk. 🙈

that's the whole manual, bestie. every flag, every default, every file path, nothing skipped, nothing invented. 🌈🌸

and for the cute lil sign-off: this page is for crb-blast 0.6.9, dated July 2023, and you can find it filed under CRB-BLAST(1). 🎀✨ go blast something reciprocal. 💖🦋

📦 where this page comes from