CIF_REFORM...THOR_NAMES(1)

📦 version 3.12.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💅 cif_reformat_pubmed_author_names(1) 💅

okay bestie, sit down, hydrate, and let me tell you about this little icon from the General Commands Manual, section 1. her whole job? she parses a CIF file and reformats author names that are chillin' in PubMed convention into COD format. that's it. that's the gig. and honestly? she ate. 🎀

✨ NAME ✨

cif_reformat_pubmed_author_names — parse a CIF file, reformat author names in PubMed convention into COD format.

like literally what it says on the tin, no cap. 🦋

🌸 SYNOPSIS 🌸

cif_reformat_pubmed_author_names--options input1.cif input*.cif

(yes the spacing is exactly like that, don't @ me, copy it verbatim bestie 🙈)

💖 DESCRIPTION 💖

so here's the vibe: she takes a CIF file, she parses it, and she reformats the author names that were written in PubMed convention so they land all pretty in COD format. glow-up for your metadata, periodt. ✨

👑 OPTIONS 👑

  • --keep-tag-order — keeps the original tag order in the CIF file. this is the default, she's lowkey already doing this for you. 💅
  • --sort-tags — reorders the tags in the CIF file according to COD. if you want them alphabetized-ish by the COD rules, this is your girl. 🔥
  • --use-perl-parser — uses the Perl parser to parse CIF files. vintage energy, we love her. 🍓
  • --use-c-parser — uses the C parser to parse CIF files. this one is the default, main character behaviour only. 👑
  • --help, --usage — outputs a short usage message (literally this message right here, hi) and exits. 🫶
  • --version — outputs version information and exits. quick lil flex and she's gone. ⭐

😭 REPORTING BUGS 😭

found a bug? don't suffer in silence bestie, report cif_reformat_pubmed_author_names bugs using e-mail:

cod-bugs@ibt.lt

she'll read it fr fr. 💜

no cap: if you see behaviour that doesn't match what's written here, that's a bug, and the address above is where it goes. 📬

okay that's the whole page, you're basically an expert now, go forth and reformat those names bestie 🌈🧚💖

this was brought to you by the General Commands Manual, CIF_REFORM...THOR_NAMES(1) energy, mwah 💋

📦 where this page comes from