CIF_BOUNDING_BOX(1)
๐ CIF_BOUNDING_BOX ๐
okay bestie, welcome to the General Commands Manual page for cif_bounding_box, section 1, and it's giving "your CIF file is going through a glow-up." no cap.
โจ NAME โจ
cif_bounding_box โ transform non-crystal CIF file (missing cell parameters and symmetry information, Cartesian coordinates are given instead of fractional) into a crystal description.
like. it takes your lil' non-crystal CIF (no cell parameters, no symmetry info, Cartesian coords instead of fractional, the whole chaotic mess) and turns it into an actual crystal description. main character transformation fr fr.
๐ธ SYNOPSIS ๐ธ
cif_bounding_box --options input1.cif input*.cif
๐ DESCRIPTION ๐
Transform non-crystal CIF file (missing cell parameters and symmetry information, Cartesian coordinates are given instead of fractional) into a crystal description.
that's the whole vibe. your file walks in with no cell parameters, no symmetry information, and Cartesian coordinates where fractional ones should be โ and it walks out as a crystal description. iconic behavior honestly. โจ
๐ OPTIONS ๐
--margin-x,--margin-y,--margin-z6 โ Set margins in x, y and z directions (default: 5 angstroms).--use-perl-parserโ Use Perl parser for CIF parsing.--use-c-parserโ Use Perl & C parser for CIF parsing (default).--help,--usageโ Output a short usage message (this message) and exit.--versionโ Output version information and exit.
so like, margins? you can set them per-direction with --margin-x, --margin-y and --margin-z, and the default is 5 angstroms. ๐ซถ and for the parsing situation you've got two choices: --use-perl-parser if you want the Perl parser doing the CIF parsing, or --use-c-parser for the Perl & C parser (that one's the default, bestie, it's the moment). need a lil' reminder of how to use this thing? --help or --usage will drop a short usage message (this message!) and dip. and --version just says the version info and exits. periodt. ๐
๐ฎ REPORTING BUGS ๐ฎ
Report cif_bounding_box bugs using e-mail: cod-bugs@ibt.lt
found a bug? don't be shy, don't gatekeep it โ email cod-bugs@ibt.lt and let them know. it's giving community service and we love that for you. ๐
okay that's the whole page, you ate that. this was CIF_BOUNDING_BOX(1) from the General Commands Manual, and yeah โ it's literally just called CIF_BOUNDING_BOX(1) at the bottom too, so consider this your cute lil' sign-off. go bound those boxes, bestie. ๐๐
๐ฆ where this page comes from
- debian bookworm: cod-tools 3.7.0+dfsg-1+b3 ยท LGPL-3.0-only
- debian trixie: cod-tools 3.11.0+dfsg-1 ยท LGPL-3.0-only
- ubuntu jammy: cod-tools 3.4.0+dfsg-1build2 ยท LGPL-3.0-only
- ubuntu noble: cod-tools 3.8.1+dfsg-1build3 ยท LGPL-3.0-only
- ubuntu questing: cod-tools 3.11.0+dfsg-1
- ubuntu resolute: cod-tools 3.11.0+dfsg-2build1 ยท LGPL-3.0-only
- ubuntu stonking: cod-tools 3.12.0+dfsg-2 ยท LGPL-3.0-only
- ๐ girlified by deepseek-ai/DeepSeek-V4.1-Flash on : a language model's rewrite of the original, under its terms