CIF_AUTOMORPHISM(1)

💖 cif_automorphism 💖

okay so bestie, this is the cif_automorphism manual page, section 1 of the General Commands Manual, and it's literally here to help you find automorphism orbits in CIF files. yes. that's the whole vibe. let's get into it 🦋

✨ NAME ✨

cif_automorphism — find automorphism orbits in CIF files.

🌸 SYNOPSIS 🌸

🎀 DESCRIPTION 🎀

Find automorphism orbits in CIF files. that's it, that's the mission. you hand it CIF files, it finds the automorphism orbits. main character energy fr fr 👑

💅 OPTIONS 💅

• --ignore-hydrogens — do NOT consider hydrogen atoms when it's doing automorphism detection. bye hydrogens 💀
• --no-ignore-hydrogens — take hydrogen atoms into consideration when searching for automorphisms. this one is the default, so if you don't say anything, the hydrogens are invited to the party 🎉
• --print-atom-site-type-symbol — output the assumed atom chemical types as the values of '_atom_site_type_symbol', but only if this data item isn't already being used. like, if the slot's free, it fills it in ✨
• --no-print-atom-site-type-symbol — do NOT output assumed atom chemical types as values of '_atom_site_type_symbol'. this is the default 🙈
• --use-c-parser — use the Perl & C parser for CIF parsing. this is the default 🔥
• --use-perl-parser — use the Perl parser for CIF parsing. the other option, for when you're feeling different 🌈
• --help, --usage — output a short usage message (this message, the one you're reading the vibe of) and then exit. peace out ✌️
• --version — output version information and exit. tell me who you are and then leave 💖

😭 REPORTING BUGS 😭

found a bug in cif_automorphism? don't be shy, report it using e-mail: cod-bugs@ibt.lt 🫶 they wanna hear it, no cap.

okay bestie that's the whole page 💜 every flag, every default, every '_atom_site_type_symbol', all of it — nothing skipped, nothing invented.

and that's a wrap on this lil slice of the General Commands Manual, page CIF_AUTOMORPHISM(1) — go find those automorphism orbits, you've got this 🧚🌸⭐