BPPALNSCORE(1)

🎀 BPPALNSCORE — the Bio++ alignment scoring bestie 🎀

okay so like, this is bppalnscore, part of the Bio++ fam, and it lives in the General Commands Manual section (that's section 1, iykyk). she's a little command-line girlie whose whole personality is alignment scoring 💅

✨ SYNOPSIS ✨

bppalnscore [options]

that's it. that's the whole vibe. you give her [options] and she does her thing 🦋

🌈 AVAILABILITY 🌈

All UNIX flavors 💖 — she's not picky, she'll run basically anywhere UNIX-y. lowkey universal queen.

🧚 DESCRIPTION 🧚

okay so here's the tea 🍓: bppalnscore takes two alignments and compares them, computing the column scores that correspond between them. like, column by column, she's judging (lovingly) 💅

and then those scores can go two places:

• 📄 get output to a text file, and/or
• 🎀 get used to generate a site selection, which gets output as a Mase file

and yes bestie, that "and/or" is doing real work — you can do one, the other, or both. the original said it, so I'm saying it. no cap. 🔥

💖 OPTIONS 💖

real talk: you should refer to info bppsuite or to the online manual of bppsuite for a complete list of available options. this page is like the appetizer, not the whole meal 🍽️

• --noninteractive — generates output for redirection in a file. so like, if you're piping her output somewhere, this is the flag you want. no interactive chit-chat, just output, ready to redirect 📤✨
• param=file — reads a file for loading options. you hand her a file</palette> and she loads her options from it instead of you typing them all out one by one. queen behavior, honestly 👑

👑 AUTHOR 👑

Bio++ Development Team. — the icons who built her 🫶

and that's the page fr fr 💜 one last thing for the sign-off bestie: this one's tagged LOCAL and carries the source/version name BPPALNSCORE(1) — no fancy version number or date on this one, just that local-girl energy, periodt. 💅🌸